Evidence map›Paper›PMID 33514945›Full record

ArticleNature protocols2021

Norovirus detection in water samples at the level of single virus copies per microliter using a smartphone-based fluorescence microscope.

Soo Chung, Lane E Breshears, Alana Gonzales, Christian M Jennings, Christina M Morrison, Walter Q Betancourt, Kelly A Reynolds, Jeong-Yeol Yoon

Abstract read
PubMed Publisher
In one paragraph

Article in Nature protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Soo Chung *Department of Biosystems Engineering, The University of Arizona, Tucson, AZ, USA.
Lane E Breshears *Department of Biomedical Engineering, The University of Arizona, Tucson, AZ, USA.
Alana GonzalesDepartment of Biomedical Engineering, The University of Arizona, Tucson, AZ, USA.
Christian M JenningsDepartment of Biomedical Engineering, The University of Arizona, Tucson, AZ, USA.
Christina M MorrisonDepartment of Environmental Science, The University of Arizona, Tucson, AZ, USA.
Walter Q BetancourtDepartment of Environmental Science, The University of Arizona, Tucson, AZ, USA.
Kelly A ReynoldsMel and Enid Zuckerman College of Public Health, The University of Arizona, Tucson, AZ, USA.ORCID http://orcid.org/0000-0003-4682-8359
Jeong-Yeol YoonDepartment of Biosystems Engineering, The University of Arizona, Tucson, AZ, USA. jyyoon@email.arizona.edu.ORCID http://orcid.org/0000-0002-9720-6472
University of Arizona · USUnited States Department of Agriculture · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Norovirus is a widespread public health threat and has a very low infectious dose. This protocol presents the extremely sensitive mobile detection of norovirus from water samples using a custom-built smartphone-based fluorescence microscope and a paper microfluidic chip. Antibody-conjugated fluorescent particles are immunoagglutinated and spread over the paper microfluidic chip by capillary action for individual counting using a smartphone-based fluorescence microscope. Smartphone images are analyzed using intensity- and size-based thresholding for the elimination of background noise and autofluorescence as well as for the isolation of immunoagglutinated particles. The resulting pixel counts of particles are correlated with the norovirus concentration of the tested sample. This protocol provides detailed guidelines for the construction and optimization of the smartphone- and paper-based assay. In addition, a 3D-printed enclosure is presented to incorporate all components in a dark environment. On-chip concentration and the assay of higher concentrations are presented to further broaden the assay range. This method is the first to be presented as a highly sensitive mobile platform for norovirus detection using low-cost materials. With all materials and reagents prepared, a single standard assay takes under 20 min. Although the method described is used for detection of norovirus, the same protocol could be adapted for detection of other pathogens by using different antibodies.

Indexed as

FluorescenceLab-On-A-Chip DevicesMicrofluidicsMicroscopy, FluorescenceNorovirusSingle Molecule ImagingSmartphoneWaterWater MicrobiologyWater

Identifiers

PMID33514945
OpenAlexW3126141255

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.