ArticleCommunications biology2021
DeepLabStream enables closed-loop behavioral experiments using deep learning-based markerless, real-time posture detection.
Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.
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Who cites it
22 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Does advancement in marker-less pose-estimation mean more quality research? A systematic review.Frontiers in behavioral neuroscience · 2025Pooled it
- Signaling Connectomics: A Brain-wide Framework for Intercellular Communication.Experimental neurobiology · 2026Article
- EthoPy provides an accessible platform for reproducible behavioral neuroscience.Cell reports methods · 2026Article
- Deconstruction of a memory engram reveals distinct ensembles recruited at learning.Nature neuroscience · 2026Article
- AI-navigated shoulder injection: precision, real-time learning and clinical translation.Frontiers in artificial intelligence · 2026Review
- Assessing attentiveness and cognitive engagement across tasks using video-based action understanding in non-human primates.Journal of neuroscience methods · 2025Article
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- RpiBeh offers a versatile open source solution for rodent behavior tracking and closed loop interventions.Scientific reports · 2025Article
- The utility of animal models to inform the next generation of human space exploration.NPJ microgravity · 2025Review
- The impact of machine learning on ethological neuroscience.Frontiers in behavioral neuroscience · 2025Review
- An automated, low-latency environment for studying the neural basis of behavior in freely moving rats.BMC biology · 2023Article
- Open-MAC: A low-cost open-source motorized commutator for electro- and opto-physiological recordings in freely moving rodents.HardwareX · 2023Article
- Review
- Integrated software for multi-dimensional analysis of motion using tracking, electrophysiology, and sensor signals.Frontiers in bioengineering and biotechnology · 2023Article
- Neuroscience Cloud Analysis As a Service: An open-source platform for scalable, reproducible data analysis.Neuron · 2022Article
- AI-enabled, implantable, multichannel wireless telemetry for photodynamic therapy.Nature communications · 2022Article
- SLEAP: A deep learning system for multi-animal pose tracking.Nature methods · 2022Article
- Article
- B-SOiD, an open-source unsupervised algorithm for identification and fast prediction of behaviors.Nature communications · 2021Article
- Systems Neuroscience of Natural Behaviors in Rodents.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021Review
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In general, animal behavior can be described as the neuronal-driven sequence of reoccurring postures through time. Most of the available current technologies focus on offline pose estimation with high spatiotemporal resolution. However, to correlate behavior with neuronal activity it is often necessary to detect and react online to behavioral expressions. Here we present DeepLabStream, a versatile closed-loop tool providing real-time pose estimation to deliver posture dependent stimulations. DeepLabStream has a temporal resolution in the millisecond range, can utilize different input, as well as output devices and can be tailored to multiple experimental designs. We employ DeepLabStream to semi-autonomously run a second-order olfactory conditioning task with freely moving mice and optogenetically label neuronal ensembles active during specific head directions.
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