Evidence map›Paper›PMID 33514857›Full record

ArticleCommunications biology2021

Evidence of two deeply divergent co-existing mitochondrial genomes in the Tuatara reveals an extremely complex genomic organization.

J Robert Macey, Stephan Pabinger, Charles G Barbieri, Ella S Buring, Vanessa L Gonzalez, Daniel G Mulcahy, Dustin P DeMeo, Lara Urban, Paul M Hime, Stefan Prost and 2 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

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  8. Genome Evolution and the Future of Phylogenomics of Non-Avian Reptiles.Animals : an open access journal from MDPI · 2023
    Review
  9. Article
  10. Review
  11. Did doubly uniparental inheritance (DUI) of mtDNA originate as a cytoplasmic male sterility (CMS) system?BioEssays : news and reviews in molecular, cellular and developmental biology · 2022
    Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 5 countries.

J Robert MaceyPeralta Genomics Institute, Chancellor's Office, Peralta Community College District, 333 East 8th Street, Oakland, CA, 94606, USA. jrobertmacey@gmail.com.
Stephan PabingerAIT Austrian Institute of Technology, Center for Health and Bioresources, Molecular Diagnostics, Giefinggasse 4, 1210, Vienna, Austria.
Charles G BarbieriPeralta Genomics Institute, Chancellor's Office, Peralta Community College District, 333 East 8th Street, Oakland, CA, 94606, USA.ORCID http://orcid.org/0000-0002-4198-956X
Ella S BuringGlobal Genome Initiative, National Museum of Natural History, Smithsonian Institution, 1000 Constitution Ave., Washington, DC, 20560, USA.
Vanessa L GonzalezGlobal Genome Initiative, National Museum of Natural History, Smithsonian Institution, 1000 Constitution Ave., Washington, DC, 20560, USA.
Daniel G MulcahyGlobal Genome Initiative, National Museum of Natural History, Smithsonian Institution, 1000 Constitution Ave., Washington, DC, 20560, USA.ORCID http://orcid.org/0000-0001-6614-2405
Dustin P DeMeoPeralta Genomics Institute, Chancellor's Office, Peralta Community College District, 333 East 8th Street, Oakland, CA, 94606, USA.
Lara UrbanDepartment of Anatomy, University of Otago, PO Box 913, Dunedin, 9054, New Zealand.ORCID http://orcid.org/0000-0002-5445-9314
Paul M HimeBiodiversity Institute and Natural History Museum, University of Kansas, 1345 Jayhawk Blvd., Lawrence, KS, 66045, USA.ORCID http://orcid.org/0000-0001-5322-4161
Stefan ProstLOEWE-Center for Translational Biodiversity Genomics, Senckenberg Museum, 60325, Frankfurt, Germany.ORCID http://orcid.org/0000-0002-6229-3596
Aaron N ElliottPeralta Genomics Institute, Chancellor's Office, Peralta Community College District, 333 East 8th Street, Oakland, CA, 94606, USA.
Neil J GemmellDepartment of Anatomy, University of Otago, PO Box 913, Dunedin, 9054, New Zealand.ORCID http://orcid.org/0000-0003-0671-3637
Peralta Community College District · USSmithsonian Institution · USUniversity of Otago · NZAmerican Museum of Natural History · USAustrian Institute of Technology · ATSouth African National Biodiversity Institute · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Animal mitochondrial genomic polymorphism occurs as low-level mitochondrial heteroplasmy and deeply divergent co-existing molecules. The latter is rare, known only in bivalvian mollusks. Here we show two deeply divergent co-existing mt-genomes in a vertebrate through genomic sequencing of the Tuatara (Sphenodon punctatus), the sole-representative of an ancient reptilian Order. The two molecules, revealed using a combination of short-read and long-read sequencing technologies, differ by 10.4% nucleotide divergence. A single long-read covers an entire mt-molecule for both strands. Phylogenetic analyses suggest a 7-8 million-year divergence between genomes. Contrary to earlier reports, all 37 genes typical of animal mitochondria, with drastic gene rearrangements, are confirmed for both mt-genomes. Also unique to vertebrates, concerted evolution drives three near-identical putative Control Region non-coding blocks. Evidence of positive selection at sites linked to metabolically important transmembrane regions of encoded proteins suggests these two mt-genomes may confer an adaptive advantage for an unusually cold-tolerant reptile.

Indexed as

Evolution, MolecularGenome, MitochondrialAcclimatizationAnimalsCold TemperatureDNA, MitochondrialFemaleMalePhylogenyReptilesDNA, Mitochondrial

Identifiers

PMID33514857
PMCPMC7846811
OpenAlexW3124281105

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.