Evidence map›Paper›PMID 33514739›Full record

ArticleNature communications2021

The nuclear envelope protein Net39 is essential for muscle nuclear integrity and chromatin organization.

Andres Ramirez-Martinez, Yichi Zhang, Kenian Chen, Jiwoong Kim, Bercin K Cenik, John R McAnally, Chunyu Cai, John M Shelton, Jian Huang, Ana Brennan and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  11. Epigenetics inCells · 2023
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. CTCF supports preferentially short lamina-associated domains.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2022
    Article
  19. Genome organization in cardiomyocytes expressing mutated A-type lamins.Frontiers in cell and developmental biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Andres Ramirez-Martinez *Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0003-1300-1101
Yichi Zhang *Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0002-2280-7599
Kenian ChenDepartment of Population and Data Sciences, Quantitative Biomedical Research Center University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0002-4083-841X
Jiwoong KimDepartment of Population and Data Sciences, Quantitative Biomedical Research Center University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0003-0220-9329
Bercin K CenikDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0003-1260-6512
John R McAnallyDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Chunyu CaiDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0001-8808-4779
John M SheltonDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0002-2949-1638
Jian HuangDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Ana BrennanDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Bret M EversDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0001-5686-0315
Pradeep P A MammenHamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0001-5688-7091
Lin XuDepartment of Population and Data Sciences, Quantitative Biomedical Research Center University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0001-5815-4457
Rhonda Bassel-DubyDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0001-7568-410X
Ning LiuDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA. Ning.Liu@utsouthwestern.edu.ORCID 0000-0003-0257-1889
Eric N OlsonDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA. Eric.Olson@utsouthwestern.edu.ORCID 0000-0003-1151-8262
Southwestern Medical Center · USThe University of Texas Southwestern Medical Center · USNorthwestern University · US

Funding

Training CoreP50HD087351 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI BASSEL-DUBY, RHONDA, IANNACCONE, SUSAN T · 2020 to 2024
$8.0M
Training CoreU54HD087351 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI OLSON, ERIC N · 2015 to 2019
$7.8M
Deciphering the role of a novel micropeptide in cardiac function and dysfunctionR01HL130253 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI BASSEL-DUBY, RHONDA, OLSON, ERIC N · 2016 to 2023
$4.4M
Molecular Dissection of Myoblast Fusion In Muscle Development and RegenerationR01AR067294 · NIAMS · UT SOUTHWESTERN MEDICAL CENTER · PI BASSEL-DUBY, RHONDA, OLSON, ERIC N · 2015 to 2019
$1.8M
Role of Twist2+ myogenic progenitor cells in adult skeletal muscleR01AR071980 · NIAMS · UT SOUTHWESTERN MEDICAL CENTER · PI LIU, NING · 2018 to 2022
$1.8M
TEM for UT Southwestern Electron Microscopy Core FacilityS10OD021685 · OD · UT SOUTHWESTERN MEDICAL CENTER · PI LUBY-PHELPS, KATHERINE J · 2017 to 2017
$398k
NHLBI NIH HHS R01 HL130253NIAMS NIH HHS R01 AR067294NIAMS NIH HHS R01 AR071980NICHD NIH HHS P50 HD087351NICHD NIH HHS U54 HD087351NIH HHS S10 OD021685
6 · The paper itself

Abstract

Lamins and transmembrane proteins within the nuclear envelope regulate nuclear structure and chromatin organization. Nuclear envelope transmembrane protein 39 (Net39) is a muscle nuclear envelope protein whose functions in vivo have not been explored. We show that mice lacking Net39 succumb to severe myopathy and juvenile lethality, with concomitant disruption in nuclear integrity, chromatin accessibility, gene expression, and metabolism. These abnormalities resemble those of Emery-Dreifuss muscular dystrophy (EDMD), caused by mutations in A-type lamins (LMNA) and other genes, like Emerin (EMD). We observe that Net39 is downregulated in EDMD patients, implicating Net39 in the pathogenesis of this disorder. Our findings highlight the role of Net39 at the nuclear envelope in maintaining muscle chromatin organization, gene expression and function, and its potential contribution to the molecular etiology of EDMD.

Indexed as

AnimalsCell LineChromatinChromatin Immunoprecipitation SequencingDisease Models, AnimalDown-RegulationFemaleHumansLamin Type AMaleMembrane ProteinsMiceMice, KnockoutMuscle, SkeletalMuscular Dystrophy, Emery-DreifussNuclear EnvelopeChromatinLamin Type ALmna protein, mouseMembrane ProteinsNet39 protein, mouseNuclear ProteinsPhosphatidate PhosphatasePLPP7 protein, human

Identifiers

PMID33514739
PMCPMC7846557
OpenAlexW3125879591

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.