Evidence map›Paper›PMID 33514557›Full record

ArticleScience advances2021

SINGLE: Atomic-resolution structure identification of nanocrystals by graphene liquid cell EM.

Cyril F Reboul, Junyoung Heo, Chiara Machello, Simon Kiesewetter, Byung Hyo Kim, Sungin Kim, Dominika Elmlund, Peter Ercius, Jungwon Park, Hans Elmlund

Abstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Disproportionation chemistry in KScience advances · 2024
    Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Cyril F ReboulDepartment of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0002-6258-2697
Junyoung HeoCenter for Nanoparticle Research, Institute for Basic Science (IBS), Seoul 08826, South Korea.ORCID http://orcid.org/0000-0003-4396-5200
Chiara MachelloDepartment of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Melbourne, Victoria, Australia.
Simon KiesewetterDepartment of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Melbourne, Victoria, Australia.
Byung Hyo KimCenter for Nanoparticle Research, Institute for Basic Science (IBS), Seoul 08826, South Korea.ORCID http://orcid.org/0000-0002-4098-0053
Sungin KimCenter for Nanoparticle Research, Institute for Basic Science (IBS), Seoul 08826, South Korea.ORCID http://orcid.org/0000-0001-9107-0781
Dominika ElmlundDepartment of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Melbourne, Victoria, Australia.
Peter ErciusNational Center for Electron Microscopy, Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.ORCID http://orcid.org/0000-0002-6762-9976
Jungwon ParkCenter for Nanoparticle Research, Institute for Basic Science (IBS), Seoul 08826, South Korea. jungwonpark@snu.ac.kr hans.elmlund@monash.edu.ORCID http://orcid.org/0000-0003-2927-4331
Hans ElmlundDepartment of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Melbourne, Victoria, Australia. jungwonpark@snu.ac.kr hans.elmlund@monash.edu.ORCID http://orcid.org/0000-0002-6992-0601

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Analysis of the three-dimensional (3D) structures of nanocrystals with solution-phase transmission electron microscopy is beginning to reveal their unique physiochemical properties. We developed a "one-particle Brownian 3D reconstruction method" based on imaging of ensembles of colloidal nanocrystals using graphene liquid cell electron microscopy. Projection images of differently rotated nanocrystals are acquired using a direct electron detector with high temporal (<2.5 ms) resolution and analyzed to obtain an ensemble of 3D reconstructions. Here, we introduce computational methods required for successful atomic-resolution 3D reconstruction: (i) tracking of the individual particles throughout the time series, (ii) subtraction of the interfering background of the graphene liquid cell, (iii) identification and rejection of low-quality images, and (iv) tailored strategies for 2D/3D alignment and averaging that differ from those used in biological cryo-electron microscopy. Our developments are made available through the open-source software package SINGLE.

Identifiers

PMID33514557
PMCPMC7846166

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.