Evidence map›Paper›PMID 33514360›Full record

ArticleBMC veterinary research2021

Molecular characterization of lumpy skin disease virus (LSDV) emerged in Bangladesh reveals unique genetic features compared to contemporary field strains.

Shukes Chandra Badhy, Mohammad Golam Azam Chowdhury, Tirumala Bharani Kumar Settypalli, Giovanni Cattoli, Charles Euloge Lamien, Mohammad Aflak Uddin Fakir, Shamima Akter, Mozaffar Goni Osmani, Faisol Talukdar, Noorjahan Begum and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed, 1 pooled it
13.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 1 synthesis or guideline pooled it, 122 citations in OpenAlex.

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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Shukes Chandra BadhyCentral Disease Investigation Laboratory (CDIL), 48, KaziAlauddin Road, Dhaka, People's Republic of Bangladesh.
Mohammad Golam Azam ChowdhuryCentral Disease Investigation Laboratory (CDIL), 48, KaziAlauddin Road, Dhaka, People's Republic of Bangladesh.
Tirumala Bharani Kumar SettypalliAnimal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Wagramer Strasse 5, P.O. Box 100, A-1400, Vienna, Austria.
Giovanni CattoliAnimal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Wagramer Strasse 5, P.O. Box 100, A-1400, Vienna, Austria.
Charles Euloge LamienAnimal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Wagramer Strasse 5, P.O. Box 100, A-1400, Vienna, Austria.
Mohammad Aflak Uddin FakirCentral Disease Investigation Laboratory (CDIL), 48, KaziAlauddin Road, Dhaka, People's Republic of Bangladesh.
Shamima AkterCentral Disease Investigation Laboratory (CDIL), 48, KaziAlauddin Road, Dhaka, People's Republic of Bangladesh.
Mozaffar Goni OsmaniDepartment of Livestock Services, Dhaka, People's Republic of Bangladesh.
Faisol TalukdarDepartment of Livestock Services, Dhaka, People's Republic of Bangladesh.
Noorjahan BegumDepartment of Livestock Services, Dhaka, People's Republic of Bangladesh.
Izhar Ahmed KhanCentral Disease Investigation Laboratory (CDIL), 48, KaziAlauddin Road, Dhaka, People's Republic of Bangladesh.
Md Bazlur RashidCentral Disease Investigation Laboratory (CDIL), 48, KaziAlauddin Road, Dhaka, People's Republic of Bangladesh.
Mohammad SadekuzzamanCentral Disease Investigation Laboratory (CDIL), 48, KaziAlauddin Road, Dhaka, People's Republic of Bangladesh. numanmicro@gmail.com.ORCID http://orcid.org/0000-0002-5530-2829
Bangladesh Livestock Research Institute · BDInternational Atomic Energy Agency · ATBangladesh Council of Scientific and Industrial Research · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLumpy skin disease (LSD) is a contagious viral disease of cattle caused by lumpy skin disease virus (LSDV). LSD has recently spread in Asia following outbreaks in the Middle East and Europe. The disease emerged in Bangladesh in July 2019 in the Chattogram district, then rapidly spread throughout the entire country. We investigated six LSD outbreaks in Bangladesh to record the clinical signs and collect samples for diagnostic confirmation. Furthermore, we performed the molecular characterization of Bangladesh isolates, analyzing the full RPO30 and GPCR genes and the partial EEV glycoprotein gene.

resultsClinical observations revealed common LSD clinical signs in the affected cattle. PCR and real-time PCR, showed the presence of the LSDV genome in samples from all six districts. Phylogenetic analysis and detailed inspection of multiple sequence alignments revealed that Bangladesh isolates differ from common LSDV field isolates encountered in Africa, the Middle East, and Europe, as well as newly emerged LSDV variants in Russia and China. Instead, they were closely related to LSDV KSGP-0240, LSDV NI2490, and LSDV Kenya.

conclusionsThese results show the importance of continuous monitoring and characterization of circulating strains and the need to continually refine the strategies for differentiating vaccine strains from field viruses.

Indexed as

AnimalsBangladeshCattleDisease OutbreaksGenome, ViralLumpy Skin DiseaseLumpy skin disease virusPhylogenyPolymerase Chain ReactionBangladeshEEV glycoproteinGPCRLumpy skin disease virus;Capripoxvirus;RPO30

Identifiers

PMID33514360
PMCPMC7844896
OpenAlexW3125107745

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.