Evidence map›Paper›PMID 33513210›Full record

ArticlePLoS pathogens2021

Baseline T cell immune phenotypes predict virologic and disease control upon SARS-CoV infection in Collaborative Cross mice.

Jessica B Graham, Jessica L Swarts, Sarah R Leist, Alexandra Schäfer, Vineet D Menachery, Lisa E Gralinski, Sophia Jeng, Darla R Miller, Michael A Mooney, Shannon K McWeeney and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

  1. Influence of polyfunctional TbetFrontiers in immunology · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Jessica B GrahamVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, Unites States of America.ORCID 0000-0001-6579-0443
Jessica L SwartsVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, Unites States of America.
Sarah R LeistDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America.ORCID 0000-0002-4989-5381
Alexandra SchäferDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America.
Vineet D MenacheryDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America.
Lisa E GralinskiDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America.ORCID 0000-0003-1374-8002
Sophia JengOHSU Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, Unites States of America.
Darla R MillerDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America.ORCID 0000-0002-0781-7254
Michael A MooneyOregon Clinical and Translational Research Institute, Oregon Health & Science University, Portland, Oregon, Unites States of America.ORCID 0000-0003-1372-8722
Shannon K McWeeneyOHSU Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, Unites States of America.ORCID 0000-0001-8333-6607
Martin T FerrisDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America.ORCID 0000-0003-1241-6268
Fernando Pardo-Manuel de VillenaDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America.
Mark T HeiseDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America.ORCID 0000-0001-5829-8477
Ralph S BaricDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America.ORCID 0000-0001-6827-8701
Jennifer M LundVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, Unites States of America.ORCID 0000-0003-3284-979X
University of North Carolina at Chapel Hill · USOregon Health & Science University · USFred Hutch Cancer Center · USUniversity of Washington · US

Funding

Unlocking Zika Virus Immune Control and Pathogenesis with the Collaborative CrossU19AI100625 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BARIC, RALPH S, HEISE, MARK T · 2012 to 2021
$36.6M
Tissue Regulatory T Cells in Mucosal InfectionR01AI141435 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI LUND, JENNIFER M · 2019 to 2023
$3.2M
NIAID NIH HHS R01 AI141435NIAID NIH HHS U19 AI100625
6 · The paper itself

Abstract

The COVID-19 pandemic has revealed that infection with SARS-CoV-2 can result in a wide range of clinical outcomes in humans. An incomplete understanding of immune correlates of protection represents a major barrier to the design of vaccines and therapeutic approaches to prevent infection or limit disease. This deficit is largely due to the lack of prospectively collected, pre-infection samples from individuals that go on to become infected with SARS-CoV-2. Here, we utilized data from genetically diverse Collaborative Cross (CC) mice infected with SARS-CoV to determine whether baseline T cell signatures are associated with a lack of viral control and severe disease upon infection. SARS-CoV infection of CC mice results in a variety of viral load trajectories and disease outcomes. Overall, a dysregulated, pro-inflammatory signature of circulating T cells at baseline was associated with severe disease upon infection. Our study serves as proof of concept that circulating T cell signatures at baseline can predict clinical and virologic outcomes upon SARS-CoV infection. Identification of basal immune predictors in humans could allow for identification of individuals at highest risk of severe clinical and virologic outcomes upon infection, who may thus most benefit from available clinical interventions to restrict infection and disease.

Indexed as

AnimalsCOVID-19FemaleHumansMaleMiceMice, Inbred C57BLPhenotypeSARS-CoV-2T-LymphocytesViral Load

Identifiers

PMID33513210
PMCPMC7875398
OpenAlexW3124219265

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.