Evidence map›Paper›PMID 33511417›Full record

ArticleNucleic acids research2021

Repression of a large number of genes requires interplay between homologous recombination and HIRA.

Ivana Misova, Alexandra Pitelova, Jaroslav Budis, Juraj Gazdarica, Tatiana Sedlackova, Anna Jordakova, Zsigmond Benko, Maria Smondrkova, Nina Mayerova, Karoline Pichlerova and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

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  8. Genetic interaction of the histone chaperonemicroPublication biology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 4 countries.

Ivana MisovaInstitute of Animal Biochemistry and Genetics, Centre of Biosciences, Slovak Academy of Sciences, 840 05 Bratislava, Slovakia.
Alexandra PitelovaInstitute of Animal Biochemistry and Genetics, Centre of Biosciences, Slovak Academy of Sciences, 840 05 Bratislava, Slovakia.
Jaroslav BudisComenius University Science Park, 841 04 Bratislava, Slovakia.
Juraj GazdaricaGeneton Ltd., 841 04 Bratislava, Slovakia.
Tatiana SedlackovaComenius University Science Park, 841 04 Bratislava, Slovakia.
Anna JordakovaDepartment of Cell Biology, Faculty of Science, Charles University, 128 00 Praha 2, Czechia.
Zsigmond BenkoInstitute of Animal Biochemistry and Genetics, Centre of Biosciences, Slovak Academy of Sciences, 840 05 Bratislava, Slovakia.
Maria SmondrkovaDepartment of Genetics, Faculty of Natural Sciences, Comenius University in Bratislava, 841 04 Bratislava, Slovakia.
Nina MayerovaDepartment of Genetics, Faculty of Natural Sciences, Comenius University in Bratislava, 841 04 Bratislava, Slovakia.
Karoline PichlerovaInstitute of Animal Biochemistry and Genetics, Centre of Biosciences, Slovak Academy of Sciences, 840 05 Bratislava, Slovakia.
Lucia StrieskovaComenius University Science Park, 841 04 Bratislava, Slovakia.
Martin PrevorovskyDepartment of Cell Biology, Faculty of Science, Charles University, 128 00 Praha 2, Czechia.
Juraj GreganAdvanced Microscopy Facility, VBCF and Department of Chromosome Biology, Max Perutz Labs, University of Vienna, Vienna Biocenter (VBC), 1030 Vienna, Austria.
Lubos CipakCancer Research Institute, Biomedical Research Center, Slovak Academy of Sciences, 845 05 Bratislava, Slovakia.
Tomas SzemesComenius University Science Park, 841 04 Bratislava, Slovakia.
Silvia Bagelova PolakovaInstitute of Animal Biochemistry and Genetics, Centre of Biosciences, Slovak Academy of Sciences, 840 05 Bratislava, Slovakia.
Geneton (Slovakia) · SKSlovak Academy of Sciences · SKCharles University · CZComenius University Bratislava · SKCancer Research Institute of the Slovak Academy of Sciences · SKUniversity of Debrecen · HUUniversity of Vienna · AT

Funding

Austrian Science Fund FWF P 30516
6 · The paper itself

Abstract

During homologous recombination, Dbl2 protein is required for localisation of Fbh1, an F-box helicase that efficiently dismantles Rad51-DNA filaments. RNA-seq analysis of dbl2Δ transcriptome showed that the dbl2 deletion results in upregulation of more than 500 loci in Schizosaccharomyces pombe. Compared with the loci with no change in expression, the misregulated loci in dbl2Δ are closer to long terminal and long tandem repeats. Furthermore, the misregulated loci overlap with antisense transcripts, retrotransposons, meiotic genes and genes located in subtelomeric regions. A comparison of the expression profiles revealed that Dbl2 represses the same type of genes as the HIRA histone chaperone complex. Although dbl2 deletion does not alleviate centromeric or telomeric silencing, it suppresses the silencing defect at the outer centromere caused by deletion of hip1 and slm9 genes encoding subunits of the HIRA complex. Moreover, our analyses revealed that cells lacking dbl2 show a slight increase of nucleosomes at transcription start sites and increased levels of methylated histone H3 (H3K9me2) at centromeres, subtelomeres, rDNA regions and long terminal repeats. Finally, we show that other proteins involved in homologous recombination, such as Fbh1, Rad51, Mus81 and Rad54, participate in the same gene repression pathway.

Indexed as

Gene Expression Regulation, FungalGene SilencingHomologous RecombinationCell Cycle ProteinsCentromereHistone CodeNucleosomesRepressor ProteinsSchizosaccharomycesSchizosaccharomyces pombe ProteinsTranscription FactorsCell Cycle ProteinsDbl2 protein, S pombehip1 protein, S pombeNucleosomesRepressor ProteinsSchizosaccharomyces pombe ProteinsSlm9 protein, S pombeTranscription Factors

Identifiers

PMID33511417
PMCPMC7913671
OpenAlexW3121401199

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.