Evidence map›Paper›PMID 33511242›Full record

ArticleMolecular therapy. Methods & clinical development2021

Applying machine learning to predict viral assembly for adeno-associated virus capsid libraries.

Andrew D Marques, Michael Kummer, Oleksandr Kondratov, Arunava Banerjee, Oleksandr Moskalenko, Sergei Zolotukhin

Open access · goldAbstract read
In one paragraph

Article in Molecular therapy. Methods & clinical development, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  8. Engineering CAR-T Therapeutics for Enhanced Solid Tumor Targeting.Advanced materials (Deerfield Beach, Fla.) · 2025
    Review
  9. AAV vector development, back to the future.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  10. Artificial Intelligence-Based Approaches for AAV Vector Engineering.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  11. Review
  12. Review
  13. Review
  14. Review
  15. Molecular Engineering of Virus Tropism.International journal of molecular sciences · 2024
    Review
  16. Review
  17. Article
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Andrew D MarquesDepartment of Pediatrics, Division of Cellular and Molecular Therapy, University of Florida, Gainesville, FL 32608, USA.
Michael KummerDepartment of Computer & Information Science & Engineering, University of Florida, Gainesville, FL 32603, USA.
Oleksandr KondratovDepartment of Pediatrics, Division of Cellular and Molecular Therapy, University of Florida, Gainesville, FL 32608, USA.
Arunava BanerjeeDepartment of Computer & Information Science & Engineering, University of Florida, Gainesville, FL 32603, USA.
Oleksandr MoskalenkoUniversity of Florida Research Computing, University of Florida, Gainesville, FL 32608, USA.
Sergei ZolotukhinDepartment of Pediatrics, Division of Cellular and Molecular Therapy, University of Florida, Gainesville, FL 32608, USA.
University of Florida · US

Funding

Engineering AAV for safe and efficient gene delivery to the human retinaR01EY024280 · NEI · UNIVERSITY OF FLORIDA · PI Shannon Elizabeth Boye · 2014 to 2026
$7.5M
NEI NIH HHS R01 EY024280
6 · The paper itself

Abstract

Machine learning (ML) can aid in novel discoveries in the field of viral gene therapy. Specifically, big data gathered through next-generation sequencing (NGS) of complex capsid libraries is an especially prominent source of lost potential in data analysis and prediction. Furthermore, adeno-associated virus (AAV)-based capsid libraries are becoming increasingly popular as a tool to select candidates for gene therapy vectors. These higher complexity AAV capsid libraries have previously been created and selected

Indexed as

AAVANNAssemblyCapsid LibrariesMachine LearningPackagingSVM

Identifiers

PMID33511242
PMCPMC7809249
OpenAlexW3107811946

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.