ArticleScientific reports2021
Comparative mitochondrial genome analysis reveals intron dynamics and gene rearrangements in two Trametes species.
Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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29 citing papers in PubMed, 35 citations in OpenAlex.
- Comparative Mitogenomics Reveals Intron Dynamics and Mitochondrial Gene Expression Shifts in Domesticated and WildJournal of fungi (Basel, Switzerland) · 2026Article
- Complete mitochondrial genomic sequence ofMitochondrial DNA. Part B, Resources · 2026Article
- The first complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2026Article
- Three Complete Mitochondrial Genomes ofBiology · 2025Article
- Phylogenetic Relationships of ThreeEcology and evolution · 2025Article
- Mitochondrial genome characterization, evolution and intron dynamics of the entomopathogenic genusFrontiers in microbiology · 2025Article
- Comprehensive analysis of the mitochondrial genome in lichen genusFrontiers in microbiology · 2025Article
- Comparative and phylogenetic analyses using mitogenomes revealed gene re-arrangement ofIMA fungus · 2025Article
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- Comparative mitogenomic analysis reveals variations and evolution of ectomycorrhizal fungalIMA fungus · 2025Article
- The complete mitochondrial genome of medicinally important wood-decaying fungusMitochondrial DNA. Part B, Resources · 2025Article
- The six whole mitochondrial genomes for theIMA fungus · 2025Article
- Comparative analyses ofComputational and structural biotechnology journal · 2024Article
- Comparative Mitogenomics Provides Valuable Insights for the Phylogeny and New DNA Barcodes ofJournal of fungi (Basel, Switzerland) · 2024Article
- Comparative Mitogenomics Analysis Revealed Evolutionary Divergence amongMicroorganisms · 2024Article
- Determining Gene Order Patterns in theInternational journal of molecular sciences · 2024Article
- The complete mitochondrial genomes of five critical phytopathogenic Bipolaris species: features, evolution, and phylogeny.IMA fungus · 2024Article
- SynGenes: a Python class for standardizing nomenclatures of mitochondrial and chloroplast genes and a web form for enhancing searches for evolutionary analyses.BMC bioinformatics · 2024Article
- The first two whole mitochondrial genomes for the genus Dactylis species: assembly and comparative genomics analysis.BMC genomics · 2024Article
- Characterization of the complete mitochondrial genome of the medical fungusMitochondrial DNA. Part B, Resources · 2024Article
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Trametes species are efficient wood decomposers that are widespread throughout the world. Mitogenomes have been widely used to understand the phylogeny and evolution of fungi. Up to now, two mitogenomes from the Trametes genus have been revealed. In the present study, the complete mitogenomes of two novel Trametes species, Trametes versicolor and T. coccinea, were assembled and compared with other Polyporales mitogenomes. Both species contained circular DNA molecules, with sizes of 67,318 bp and 99,976 bp, respectively. Comparative mitogenomic analysis indicated that the gene number, length and base composition varied between the four Trametes mitogenomes we tested. In addition, all of the core protein coding genes in Trametes species were identified and subjected to purifying selection. The mitogenome of T. coccinea contained the largest number of introns among the four Trametes species tested, and introns were considered the main factors contributing to size variations of Polyporales. Several novel introns were detected in the Trametes species we assembled, and introns identified in Polyporales were found to undergo frequent loss/gain events. Large-scale gene rearrangements were detected between closely related Trametes species, including gene inversions, insertions, and migrations. A well-supported phylogenetic tree for 77 Basidiomycetes was obtained based on the combined mitochondrial gene set using 2 phylogenetic inference methods. The results showed that mitochondrial genes are effective molecular markers for understanding the phylogeny of Basidiomycetes. This study is the first to report the mitogenome rearrangement and intron dynamics of Trametes species, which shed light on the evolution of Trametes and other related species.
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