Evidence map›Paper›PMID 33510277›Full record

ArticleScientific reports2021

A translation enhancer element from black beetle virus engages yeast eIF4G1 to drive cap-independent translation initiation.

Brandon M Trainor, Arnab Ghosh, Dimitri G Pestov, Christopher U T Hellen, Natalia Shcherbik

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. IVT-free, chemically synthesized protein-encoding RNA oligonucleotides for rapid production of personalized cancer vaccines.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Brandon M TrainorDepartment of Cell Biology and Neuroscience, School of Osteopathic Medicine, Rowan University, 2 Medical Center Drive, Stratford, NJ, 08084, USA.
Arnab GhoshDepartment of Cell Biology and Neuroscience, School of Osteopathic Medicine, Rowan University, 2 Medical Center Drive, Stratford, NJ, 08084, USA.
Dimitri G PestovDepartment of Cell Biology and Neuroscience, School of Osteopathic Medicine, Rowan University, 2 Medical Center Drive, Stratford, NJ, 08084, USA.
Christopher U T HellenDepartment of Cell Biology, State University of New York Downstate Health Sciences University, 450 Clarkson Avenue MSC 44, Brooklyn, NY, 11203, USA.
Natalia ShcherbikDepartment of Cell Biology and Neuroscience, School of Osteopathic Medicine, Rowan University, 2 Medical Center Drive, Stratford, NJ, 08084, USA. shcherna@rowan.edu.
Rowan University · USState University of New York · US

Funding

Non-canonical mechanisms of translation of viral mRNAsR01AI123406 · NIAID · SUNY DOWNSTATE MEDICAL CENTER · PI HELLEN, CHRISTOPHER ULRICH TRISTRAM · 2016 to 2020
$3.1M
Translational Rescue Mechanisms in EukaryotesR01GM114308 · NIGMS · ROWAN UNIVERSITY SCHOOL/OSTEOPATHIC MED · PI SHCHERBIK, NATALIA · 2016 to 2020
$1.6M
NIAID NIH HHS R01 AI123406NIGMS NIH HHS R01 GM114308
6 · The paper itself

Abstract

Cap-independent translation initiation plays crucial roles in fine-tuning gene expression under global translation shutdown conditions. Translation of uncapped or de-capped transcripts can be stimulated by Cap-independent translation enhancer (CITE) elements, but the mechanisms of CITE-mediated translation initiation remain understudied. Here, we characterized a short 5'-UTR RNA sequence from black beetle virus, BBV-seq. Mutational analysis indicates that the entire BBV-seq is required for efficient translation initiation, but this sequence does not operate as an IRES-type module. In yeast cell-free translation extracts, BBV-seq promoted efficient initiation on cap-free mRNA using a scanning mechanism. Moreover, BBV-seq can increase translation efficiency resulting from conventional cap-dependent translation initiation. Using genetic approaches, we found that BBV-seq exploits RNA-binding properties of eIF4G1 to promote initiation. Thus, BBV-seq constitutes a previously uncharacterized short, linear CITE that influences eIF4G1 to initiate 5' end-dependent, cap-independent translation. These findings bring new insights into CITE-mediated translational control of gene expression.

Indexed as

Enhancer Elements, GeneticAdenineBase SequenceCell-Free SystemDNA Mutational AnalysisEukaryotic Initiation Factor-4GGenes, ReporterModels, BiologicalNodaviridaeOpen Reading FramesPeptide Chain Initiation, TranslationalProtein DomainsReproducibility of ResultsRNA CapsRNA, MessengerSaccharomyces cerevisiaeAdenineEukaryotic Initiation Factor-4GRNA CapsRNA, MessengerSaccharomyces cerevisiae ProteinsTIF4631 protein, S cerevisiae

Identifiers

PMID33510277
PMCPMC7844027
OpenAlexW3122197288

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.