Evidence map›Paper›PMID 33506581›Full record

ArticleMolecular oncology2021

Molecular profiles of response to neoadjuvant chemoradiotherapy in oesophageal cancers to develop personalized treatment strategies.

Leonie K de Klerk, Ruben S A Goedegebuure, Nicole C T van Grieken, Johanna W van Sandick, Annemieke Cats, Jurrien Stiekema, Rosa T van der Kaaij, Arantza Farina Sarasqueta, Manon van Engeland, Maarten A J M Jacobs and 7 more

Abstract read
In one paragraph

Article in Molecular oncology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Leonie K de Klerk *Department of Medical Oncology, Cancer Center Amsterdam, Amsterdam UMC, location VUmc, The Netherlands.ORCID 0000-0002-8034-641X
Ruben S A Goedegebuure *Department of Medical Oncology, Cancer Center Amsterdam, Amsterdam UMC, location VUmc, The Netherlands.ORCID 0000-0002-4616-5295
Nicole C T van GriekenDepartment of Pathology, Cancer Center Amsterdam, Amsterdam UMC, location VUmc, The Netherlands.
Johanna W van SandickDepartment of Surgery, Netherlands Cancer Institute/Antoni van Leeuwenhoek Hospital, Amsterdam, The Netherlands.
Annemieke CatsDepartment of Gastrointestinal Oncology, Netherlands Cancer Institute/Antoni van Leeuwenhoek Hospital, Amsterdam, The Netherlands.
Jurrien StiekemaDepartment of Surgery, Netherlands Cancer Institute/Antoni van Leeuwenhoek Hospital, Amsterdam, The Netherlands.
Rosa T van der KaaijDepartment of Surgery, Netherlands Cancer Institute/Antoni van Leeuwenhoek Hospital, Amsterdam, The Netherlands.
Arantza Farina SarasquetaDepartment of Pathology, Cancer Center Amsterdam, Amsterdam UMC, location VUmc, The Netherlands.
Manon van EngelandDepartment of Pathology, GROW-School for Oncology and Developmental Biology, Maastricht University Medical Center, The Netherlands.
Maarten A J M JacobsDepartment of Gastroenterology and Hepatology, Amsterdam UMC, location VUmc, The Netherlands.
Roy L J van WanrooijDepartment of Gastroenterology and Hepatology, Amsterdam UMC, location VUmc, The Netherlands.
Donald L van der PeetDepartment of Surgery, Amsterdam UMC, location VUmc, The Netherlands.
Aaron R ThornerCenter for Cancer Genome Discovery, Dana-Farber Cancer Institute, Boston, MA, USA.
Henk M W VerheulDepartment of Medical Oncology, Cancer Center Amsterdam, Amsterdam UMC, location VUmc, The Netherlands.
Victor L J L ThijssenDepartment of Radiation Oncology, Amsterdam UMC, location VUmc, The Netherlands.
Adam J Bass *Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Sarah Derks *Department of Medical Oncology, Cancer Center Amsterdam, Amsterdam UMC, location VUmc, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of molecular predictive markers of response to neoadjuvant chemoradiation could aid clinical decision-making in patients with localized oesophageal cancer. Therefore, we subjected pretreatment biopsies of 75 adenocarcinoma (OAC) and 16 squamous cell carcinoma (OSCC) patients to targeted next-generation DNA sequencing, as well as biopsies of 85 OAC and 20 OSCC patients to promoter methylation analysis of eight GI-specific genes, and subsequently searched for associations with histopathological response and disease-free (DFS) and overall survival (OS). Thereby, we found that in OAC, CSMD1 deletion (8%) and ETV4 amplification (5%) were associated with a favourable histopathological response, whereas SMURF1 amplification (5%) and SMARCA4 mutation (7%) were associated with an unfavourable histopathological response. KRAS (15%) and GATA4 (7%) amplification were associated with shorter OS. In OSCC, TP63 amplification (25%) and TFPI2 (10%) gene promoter methylation were associated with an unfavourable histopathological response and shorter DFS (TP63) and OS (TFPI2), whereas CDKN2A deletion (38%) was associated with prolonged OS. In conclusion, this study identified candidate genetic biomarkers associated with response to neoadjuvant chemoradiotherapy in patients with localized oesophageal cancer.

Indexed as

Neoadjuvant TherapyPrecision MedicineAdenocarcinomaAdultAgedAged, 80 and overCarcinoma, Squamous CellCpG IslandsCyclin-Dependent Kinase Inhibitor p16Disease-Free SurvivalDNA HelicasesDNA MethylationEsophageal NeoplasmsFemaleGATA4 Transcription FactorGlycoproteinsCDKN2A protein, humanCyclin-Dependent Kinase Inhibitor p16DNA HelicasesGATA4 protein, humanGATA4 Transcription FactorGlycoproteinsKRAS protein, humanNuclear ProteinsProto-Oncogene Proteins p21(ras)SMARCA4 protein, humanSMURF1 protein, humantissue-factor-pathway inhibitor 2TP63 protein, humanTranscription FactorsTumor Suppressor ProteinsUbiquitin-Protein LigaseschemoradiationDNA sequencinggene methylationgenetic biomarkersoesophageal cancerpredictive markers

Identifiers

PMID33506581
PMCPMC8024738

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.