Evidence map›Paper›PMID 33506383›Full record

ReviewNeuroinformatics2022

A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility.

Mathew Birdsall Abrams, Jan G Bjaalie, Samir Das, Gary F Egan, Satrajit S Ghosh, Wojtek J Goscinski, Jeffrey S Grethe, Jeanette Hellgren Kotaleski, Eric Tatt Wei Ho, David N Kennedy and 13 more

Erratum issuedAbstract readReview
In one paragraph

Review in Neuroinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Review
  4. eFEL: electrophysiology feature extraction library.Bioinformatics (Oxford, England) · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Reporting checklists in neuroimaging: promoting transparency, replicability, and reproducibility.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2024
    Review
  13. Article
  14. Automating literature screening and curation with applications to computational neuroscience.Journal of the American Medical Informatics Association : JAMIA · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Increasing Rigor of Preclinical Research to Maximize Opportunities for Translation.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2023
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors.

Mathew Birdsall AbramsINCF Secretariat, Karolinska Institutet, Stockholm, Sweden. mathew@incf.org.ORCID http://orcid.org/0000-0001-9438-9691
Jan G BjaalieInstitute of Basic Medical Sciences, University of Oslo, Oslo, Norway.ORCID https://orcid.org/0000-0001-7899-906X
Samir DasMcGill Centre for Integrative Neuroscience, McGill University, Montreal, QC, Canada.ORCID https://orcid.org/0000-0003-2018-8760
Gary F EganMonash Biomedical Imaging, Monash University, Clayton, VIC, Australia.ORCID https://orcid.org/0000-0002-3186-4026
Satrajit S GhoshMcGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID https://orcid.org/0000-0002-5312-6729
Wojtek J GoscinskiMonash eResearch Centre, Monash University, Melbourne, VIC, Australia.ORCID https://orcid.org/0000-0001-6587-1016
Jeffrey S GretheDepartment of Neuroscience, School of Medicine, University of California, San Diego, La Jolla, CA, USA.ORCID https://orcid.org/0000-0001-5212-7052
Jeanette Hellgren KotaleskiKTH Royal Institute of Technology, School of Electrical Engineering and Computer Science, Stockholm, Sweden.ORCID https://orcid.org/0000-0002-0550-0739
Eric Tatt Wei HoCentre for Intelligent Signal and Imaging Research, Institute of Health and Analytics, Universiti Teknologi PETRONAS, Perak, Malaysia.ORCID https://orcid.org/0000-0002-7590-1028
David N KennedyDepartment of Psychiatry, University of Massachusetts Medical School, Worchester, MA, USA.ORCID https://orcid.org/0000-0001-7742-1792
Linda J LanyonSerendipitea.World, Hasselby, Sweden.ORCID https://orcid.org/0000-0002-0885-1825
Trygve B LeergaardInstitute of Basic Medical Sciences, University of Oslo, Oslo, Norway.ORCID https://orcid.org/0000-0001-5965-8470
Helen S MaybergNash Family Center for Advanced Circuit Therapeutics, Icahn School of Medicine, New York, NY, USA.ORCID https://orcid.org/0000-0002-1672-2716
Luciano MilanesiInstitute of Biomedical Technologies, National Research Council (CNR), Milan, Italy.ORCID https://orcid.org/0000-0002-1201-3939
Roman MoučekDepartment of Computer Science and Engineering, Faculty of Applied Sciences, University of West Bohemia, Pilsen, Czech Republic.ORCID https://orcid.org/0000-0002-4665-8946
J B PolineMontreal Neurological Institute, Faculty of Medicine and Health Sciences, McGill University, Montreal, Canada.ORCID https://orcid.org/0000-0002-9794-749X
Prasun K RoyComputational Neuroscience & Neuroimaging Laboratory, School of Bio-Medical Engineering, Indian Institute of Technology (BHU), Varanasi, UP, India.ORCID https://orcid.org/0000-0001-9477-1356
Stephen C StrotherRotman Research Institute, Baycrest Centre, Department of Medical Biophysics, University of Toronto, Ontario, ON, Canada.ORCID https://orcid.org/0000-0002-3198-217X
Tong Boon TangCentre for Intelligent Signal and Imaging Research, Institute of Health and Analytics, Universiti Teknologi PETRONAS, Bandar Seri Iskandar, Malaysia.ORCID https://orcid.org/0000-0002-5721-6828
Paul TiesingaDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, Nijmegen, Netherlands.ORCID https://orcid.org/0000-0003-4509-6870
Thomas WachtlerDepartment of Biology II, Ludwig-Maximilians-Universität München, Martinsried, Planegg, Germany.ORCID https://orcid.org/0000-0003-2015-6590
Daniel K WójcikLaboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland.ORCID https://orcid.org/0000-0003-0812-9872
Maryann E MartoneDepartment of Neuroscience, School of Medicine, University of California, San Diego, La Jolla, CA, USA.ORCID https://orcid.org/0000-0002-8406-3871

Funding

Resource DiscoveryP41EB019936 · NIBIB · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI David Nelson Kennedy · 2016 to 2026
$15.2M
DANDI: Distributed Archives for Neurophysiology Data IntegrationR24MH117295 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Satrajit Sujit Ghosh, Yaroslav O Halchenko · 2019 to 2026
$11.6M
Large-scale meta-analysis of functional MRI dataR01MH096906 · NIMH · UNIVERSITY OF TEXAS AT AUSTIN · PI Alejandro De La Vega · 2012 to 2026
$7.9M
Exposing the Deep Content of the Publication: Knowledge Extraction for Neuroimaging in Child PsychiatryR01MH083320 · NIMH · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI FRAZIER, JEAN A, KENNEDY, DAVID NELSON · 2009 to 2020
$6.3M
The Neuroimaging Data Model: FAIR descriptors of Brain Initiative Imaging ExperimentsRF1MH120021 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI KEATOR, DAVID BRYANT · 2019 to 2019
$944k
NIBIB NIH HHS P41 EB019936NIMH NIH HHS R01 MH083320NIMH NIH HHS R01 MH096906NIMH NIH HHS R24 MH117295NIMH NIH HHS RF1 MH120021
6 · The paper itself

Abstract

There is great need for coordination around standards and best practices in neuroscience to support efforts to make neuroscience a data-centric discipline. Major brain initiatives launched around the world are poised to generate huge stores of neuroscience data. At the same time, neuroscience, like many domains in biomedicine, is confronting the issues of transparency, rigor, and reproducibility. Widely used, validated standards and best practices are key to addressing the challenges in both big and small data science, as they are essential for integrating diverse data and for developing a robust, effective, and sustainable infrastructure to support open and reproducible neuroscience. However, developing community standards and gaining their adoption is difficult. The current landscape is characterized both by a lack of robust, validated standards and a plethora of overlapping, underdeveloped, untested and underutilized standards and best practices. The International Neuroinformatics Coordinating Facility (INCF), an independent organization dedicated to promoting data sharing through the coordination of infrastructure and standards, has recently implemented a formal procedure for evaluating and endorsing community standards and best practices in support of the FAIR principles. By formally serving as a standards organization dedicated to open and FAIR neuroscience, INCF helps evaluate, promulgate, and coordinate standards and best practices across neuroscience. Here, we provide an overview of the process and discuss how neuroscience can benefit from having a dedicated standards body.

Indexed as

NeurosciencesReproducibility of ResultsFAIR principlesINCFINCF endorsement processNeuroinformaticsNeuroscienceStandards and best practicesStandards organization

Identifiers

PMID33506383
PMCPMC9036053

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.