Evidence map›Paper›PMID 33505781›Full record

ArticlePeerJ2021

In situ dissecting the evolution of gene duplication with different histone modification patterns based on high-throughput data analysis in

Jingjing Wang, Yuriy L Orlov, Xue Li, Yincong Zhou, Yongjing Liu, Chunhui Yuan, Ming Chen

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in PeerJ, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Plant Biology and Biotechnology: Focus on Genomics and Bioinformatics.International journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Jingjing Wang *Center for Stem Cell and Regenerative Medicine, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, P. R. China.
Yuriy L Orlov *The Digital Health Institute, I.M Sechenov First Moscow State Medical University (Sechenov University), Moscow, Russia.ORCID 0000-0003-0587-1609
Xue LiJames D. Watson Institute of Genome Sciences, Zhejiang University, Hangzhou, P. R. China.
Yincong ZhouDepartment of Bioinformatics, The State Key Laboratory of Plant Physiology and Biochemistry, Institute of Plant Science, College of Life Sciences, Zhejiang University, Hangzhou, P. R. China.
Yongjing LiuDepartment of Bioinformatics, The State Key Laboratory of Plant Physiology and Biochemistry, Institute of Plant Science, College of Life Sciences, Zhejiang University, Hangzhou, P. R. China.
Chunhui YuanZhejiang Provincial Key Lab for Tissue Engineering and Regenerative Medicine, Dr. Li Dak Sum & Yip Yio Chin Center for Stem Cell and Regenerative Medicine, Zhejiang University, Hangzhou, P. R. China.
Ming ChenCenter for Stem Cell and Regenerative Medicine, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, P. R. China.ORCID 0000-0002-9677-1699
First Affiliated Hospital Zhejiang University · CNState Key Laboratory of Plant Physiology and BiochemistryPeoples' Friendship University of Russia · RUWestlake University · CNZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGenetic regulation is known to contribute to the divergent expression of duplicate genes; however, little is known about how epigenetic modifications regulate the expression of duplicate genes in plants.

methodsThe histone modification (HM) profile patterns of different modes of gene duplication, including the whole genome duplication, proximal duplication, tandem duplication and transposed duplication were characterized based on ChIP-chip or ChIP-seq datasets. In this study, 10 distinct HM marks including H2Bub, H3K4me1, H3K4me2, H3K4me3, H3K9ac, H3K9me2, H3K27me1, H3K27me3, H3K36me3 and H3K14ac were analyzed. Moreover, the features of gene duplication with different HM patterns were characterized based on 88 RNA-seq datasets of

resultsThis study showed that duplicate genes in

Indexed as

A. thalianaBioinformaticsChIP-chipEpigenetic pattern evolutionGene duplicationHistone modificationsPlant genomeRNA-seq

Identifiers

PMID33505781
PMCPMC7792519
OpenAlexW3118532502

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.