Evidence map›Paper›PMID 33504840›Full record

ArticleScientific reports2021

Identification of RNA-binding proteins that partner with Lin28a to regulate Dnmt3a expression.

Silvia Parisi, Daniela Castaldo, Silvia Piscitelli, Chiara D'Ambrosio, Giuseppina Divisato, Fabiana Passaro, Rosario Avolio, Alessia Castellucci, Paolo Gianfico, Mariorosario Masullo and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 18 citations in OpenAlex.

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  12. RNA-binding protein signaling in adult neurogenesis.Frontiers in cell and developmental biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Silvia ParisiDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy. silvia.parisi@unina.it.
Daniela CastaldoDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy.
Silvia PiscitelliDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy.
Chiara D'AmbrosioProteomics and Mass Spectrometry Laboratory, ISPAAM, Italian National Research Council, 80147, Naples, Italy.
Giuseppina DivisatoDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy.
Fabiana PassaroDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy.
Rosario AvolioDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy.
Alessia CastellucciDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy.
Paolo GianficoDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy.
Mariorosario MasulloDepartment of Movement Sciences and Wellbeing, University of Naples Parthenope, 80133, Naples, Italy.
Andrea ScaloniProteomics and Mass Spectrometry Laboratory, ISPAAM, Italian National Research Council, 80147, Naples, Italy.
Tommaso RussoDepartment of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 80131, Naples, Italy. tommaso.russo@unina.it.
University of Naples Federico II · ITIstituto per il Sistema Produzione Animale in Ambiente Mediterraneo · ITParthenope University of Naples · IT

Funding

Ministero dell'Istruzione, dell'Università e della Ricerca 20157JF8P5Ministero dell'Istruzione, dell'Università e della Ricerca 2017CH4RNPRegione Campania SATIN
6 · The paper itself

Abstract

Lin28 is an evolutionary conserved RNA-binding protein that plays important roles during embryonic development and tumorigenesis. It regulates gene expression through two different post-transcriptional mechanisms. The first one is based on the regulation of miRNA biogenesis, in particular that of the let-7 family, whose expression is suppressed by Lin28. Thus, loss of Lin28 leads to the upregulation of mRNAs that are targets of let-7 species. The second mechanism is based on the direct interaction of Lin28 with a large number of mRNAs, which results in the regulation of their translation. This second mechanism remains poorly understood. To address this issue, we purified high molecular weight complexes containing Lin28a in mouse embryonic stem cells (ESCs). Numerous proteins, co-purified with Lin28a, were identified by proteomic procedures and tested for their possible role in Lin28a-dependent regulation of the mRNA encoding DNA methyltransferase 3a (Dnmt3a). The results show that Lin28a activity is dependent on many proteins, including three helicases and four RNA-binding proteins. The suppression of four of these proteins, namely Ddx3x, Hnrnph1, Hnrnpu or Syncrip, interferes with the binding of Lin28a to the Dnmt3a mRNA, thus suggesting that they are part of an oligomeric ribonucleoprotein complex that is necessary for Lin28a activity.

Indexed as

3' Untranslated RegionsBlotting, WesternChromatography, GelDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3AHumansImmunoprecipitationProteomicsRNA-Binding Proteins3' Untranslated RegionsDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADNMT3A protein, humanDnmt3a protein, mouseLin28A protein, humanRNA-Binding Proteins

Identifiers

PMID33504840
PMCPMC7841167
OpenAlexW3122160559

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.