Evidence map›Paper›PMID 33504769›Full record

ArticleNPJ systems biology and applications2021

High-throughput toxicogenomic screening of chemicals in the environment using metabolically competent hepatic cell cultures.

Jill A Franzosa, Jessica A Bonzo, John Jack, Nancy C Baker, Parth Kothiya, Rafal P Witek, Patrick Hurban, Stephen Siferd, Susan Hester, Imran Shah and 3 more

Abstract read
In one paragraph

Article in NPJ systems biology and applications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Transferability and Reproducibility of the HepaRG CometChip Assay.Environmental and molecular mutagenesis · 2025
    Article
  7. HepaRGNAM journal · 2025
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. State of the Art of Genomic Technology in Toxicology: A Review.International journal of molecular sciences · 2023
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Jill A FranzosaCenter for Computational Toxicology and Exposure, Office of Research and Development, U.S. EPA, Research Triangle Park, NC, 27711, USA.
Jessica A BonzoCell Biology, Biosciences Division, Thermo Fisher Scientific, Frederick, MD, 21703, USA.ORCID http://orcid.org/0000-0003-2403-9981
John JackCenter for Computational Toxicology and Exposure, Office of Research and Development, U.S. EPA, Research Triangle Park, NC, 27711, USA.ORCID http://orcid.org/0000-0002-2498-6308
Nancy C BakerLeidos, Research Triangle Park, NC, 27711, USA.ORCID http://orcid.org/0000-0002-8351-9435
Parth KothiyaCenter for Computational Toxicology and Exposure, Office of Research and Development, U.S. EPA, Research Triangle Park, NC, 27711, USA.
Rafal P WitekCell Biology, Biosciences Division, Thermo Fisher Scientific, Frederick, MD, 21703, USA.
Patrick HurbanExpression Analysis, Durham, NC, 27713, USA.
Stephen SiferdExpression Analysis, Durham, NC, 27713, USA.
Susan HesterCenter for Computational Toxicology and Exposure, Office of Research and Development, U.S. EPA, Research Triangle Park, NC, 27711, USA.ORCID http://orcid.org/0000-0002-0983-105X
Imran ShahCenter for Computational Toxicology and Exposure, Office of Research and Development, U.S. EPA, Research Triangle Park, NC, 27711, USA.ORCID http://orcid.org/0000-0003-0808-0140
Stephen S FergusonDivision of National Toxicology Program, National Institutes of Environmental Health Sciences of National Institutes of Health, Durham, NC, 27709, USA.ORCID http://orcid.org/0000-0003-3172-8347
Keith A HouckCenter for Computational Toxicology and Exposure, Office of Research and Development, U.S. EPA, Research Triangle Park, NC, 27711, USA.ORCID http://orcid.org/0000-0002-0055-2249
John F WambaughCenter for Computational Toxicology and Exposure, Office of Research and Development, U.S. EPA, Research Triangle Park, NC, 27711, USA. Wambaugh.john@epa.gov.ORCID http://orcid.org/0000-0002-4024-534X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ToxCast in vitro screening program has provided concentration-response bioactivity data across more than a thousand assay endpoints for thousands of chemicals found in our environment and commerce. However, most ToxCast screening assays have evaluated individual biological targets in cancer cell lines lacking integrated physiological functionality (such as receptor signaling, metabolism). We evaluated differentiated HepaRG

Indexed as

Bayes TheoremCell Culture TechniquesCell LineHepatocytesHigh-Throughput Screening AssaysHumansLiverSmall Molecule LibrariesToxicogeneticsTranscription FactorsTranscriptomeSmall Molecule LibrariesTranscription Factors

Identifiers

PMID33504769
PMCPMC7840683

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.