Evidence map›Paper›PMID 33504090›Full record

ArticleViruses2021

Two Different Strains of Severe Fever with Thrombocytopenia Syndrome Virus (SFTSV) in North and South Osaka by Phylogenetic Analysis of Evolutionary Lineage: Evidence for Independent SFTSV Transmission.

Ryo Ikemori, Ikuko Aoyama, Tadahiro Sasaki, Hirono Takabayashi, Kazutoshi Morisada, Masaru Kinoshita, Kazuyoshi Ikuta, Takahiro Yumisashi, Kazushi Motomura

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Ryo IkemoriVirology Section, Division of Microbiology, Osaka Institute of Public Health, Osaka 537-0025, Japan.
Ikuko AoyamaVirology Section, Division of Microbiology, Osaka Institute of Public Health, Osaka 537-0025, Japan.
Tadahiro SasakiVirology Section, Division of Microbiology, Osaka Institute of Public Health, Osaka 537-0025, Japan.
Hirono TakabayashiFujiidera Public Health Center, Fujiidera, Osaka 583-0024, Japan.
Kazutoshi MorisadaTakatsuki-City Public Health Center, Takatsuki, Osaka 569-0052, Japan.
Masaru KinoshitaDepartment of Health and Medical Care, Osaka Prefectural Government, Osaka 540-8570, Japan.
Kazuyoshi IkutaVirology Section, Division of Microbiology, Osaka Institute of Public Health, Osaka 537-0025, Japan.
Takahiro YumisashiVirology Section, Division of Microbiology, Osaka Institute of Public Health, Osaka 537-0025, Japan.
Kazushi MotomuraVirology Section, Division of Microbiology, Osaka Institute of Public Health, Osaka 537-0025, Japan.
Osaka Prefectural Institute of Public Health · JPFujiidera Technical High School · JPOsaka Prefectural Government · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Severe fever with thrombocytopenia syndrome (SFTS) is a novel tick-borne infectious disease, therefore, the information on the whole genome of the SFTS virus (SFTSV) is still limited. This study demonstrates a nearly whole genome of the SFTSV identified in Osaka in 2017 and 2018 by next-generation sequencing (NGS). The evolutionary lineage of two genotypes, C5 and J1, was identified in Osaka. The first case in Osaka belongs to suspect reassortment (L:C5, M:C5, S:C4), the other is genotype J1 (L: J1, M: J1, S: J1) according to the classification by a Japanese group. C5 was identified in China, indicating that C5 identified in this study may be transmitted by birds between China and Japan. This study revealed that different SFTSV genotypes were distributed in two local areas, suggesting the separate or focal transmission patterns in Osaka.

Indexed as

PhylogenyEvolution, MolecularGenome, ViralGenotypeHumansJapanPhlebovirusRNA, ViralSevere Fever with Thrombocytopenia SyndromeRNA, ViralgenotypeSFTSwhole genome

Identifiers

PMID33504090
PMCPMC7911098
OpenAlexW3121966374

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.