Evidence map›Paper›PMID 33504001›Full record

ArticleGenes2021

Deregulated Immune Pathway Associated with Palbociclib Resistance in Preclinical Breast Cancer Models: Integrative Genomics and Transcriptomics.

Kamal Pandey, Eunbyeol Lee, Nahee Park, Jin Hur, Young Bin Cho, Nar Bahadur Katuwal, Seung Ki Kim, Seung Ah Lee, Isaac Kim, Hee Jung An and 2 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Kamal PandeyHematology and Oncology, Department of Internal Medicine, CHA Bundang Medical Center, CHA University, Seongnam 13496, Korea.ORCID 0000-0003-2144-0577
Eunbyeol LeeDepartment of Biomedical Science, The Graduate School, CHA University, Seongnam 13496, Korea.
Nahee ParkHematology and Oncology, Department of Internal Medicine, CHA Bundang Medical Center, CHA University, Seongnam 13496, Korea.
Jin HurHematology and Oncology, Department of Internal Medicine, CHA Bundang Medical Center, CHA University, Seongnam 13496, Korea.
Young Bin ChoHematology and Oncology, Department of Internal Medicine, CHA Bundang Medical Center, CHA University, Seongnam 13496, Korea.
Nar Bahadur KatuwalDepartment of Biomedical Science, The Graduate School, CHA University, Seongnam 13496, Korea.ORCID 0000-0002-7648-8044
Seung Ki KimDepartment of Surgery, CHA Bundang Medical Center, CHA University, Seongnam 13496, Korea.
Seung Ah LeeDepartment of Surgery, CHA Bundang Medical Center, CHA University, Seongnam 13496, Korea.ORCID 0000-0003-2435-1254
Isaac KimDepartment of Surgery, CHA Bundang Medical Center, CHA University, Seongnam 13496, Korea.
Hee Jung AnDepartment of Pathology, CHA Bundang Medical Center, CHA University, Seongnam 13496, Korea.
Sohyun HwangDepartment of Biomedical Science, The Graduate School, CHA University, Seongnam 13496, Korea.ORCID 0000-0003-2461-6806
Yong Wha MoonHematology and Oncology, Department of Internal Medicine, CHA Bundang Medical Center, CHA University, Seongnam 13496, Korea.ORCID 0000-0002-7943-974X
CHA University Bundang Medical Center · KRCHA University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recently, cyclin-dependent kinase (CDK) 4/6 inhibitors have been widely used to treat advanced hormone receptor-positive breast cancer. Despite promising clinical outcomes, almost all patients eventually acquire resistance to CDK4/6 inhibitors. Here, we screened genes associated with palbociclib resistance through genomics and transcriptomics in preclinical breast cancer models. Palbociclib-resistant cells were generated by exposing hormone receptor-positive breast cancer cell lines to palbociclib. Whole-exome sequencing (WES) and a mRNA microarray were performed to compare the genomic and transcriptomic landscape between both palbociclib-sensitive and resistant cells. Microarray analysis revealed 651 differentially expressed genes (DEGs), while WES revealed 107 clinically significant mutated genes. Furthermore, pathway analysis of both DEGs and mutated genes revealed immune pathway deregulation in palbociclib-resistant cells. Notably, DEG annotation revealed activation of type I interferon pathway, activation of immune checkpoint inhibitory pathway, and suppression of immune checkpoint stimulatory pathway in palbociclib-resistant cells. Moreover, mutations in

Indexed as

Drug Resistance, NeoplasmAntineoplastic AgentsBiomarkers, TumorCell Line, TumorComputational BiologyExome SequencingFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticGene OntologyGenomicsHumansImmunomodulationMutationPiperazinesProtein Kinase InhibitorsAntineoplastic AgentsBiomarkers, TumorpalbociclibPiperazinesProtein Kinase InhibitorsPyridinesCDK4/6drug resistancegenomicshormone receptor-positive breast cancerimmune pathwaytranscriptomics

Identifiers

PMID33504001
PMCPMC7912104
OpenAlexW3124262210

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.