Evidence map›Paper›PMID 33503336›Full record

ArticleCancer reports (Hoboken, N.J.)2021

Novel germline TRAF3IP3 mutation in a dyad with familial acute B lymphoblastic leukemia.

Lauren Pommert, Robert Burns, Quinlan Furumo, Kirthi Pulakanti, Jon Brandt, Michael J Burke, Sridhar Rao

Open access · goldAbstract readCase Reports
In one paragraph

Article in Cancer reports (Hoboken, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Lauren PommertDivision of Oncology, Cancer and Blood Diseases Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.ORCID 0000-0001-8760-5202
Robert BurnsBlood Research Institute, Versiti Wisconsin, Milwaukee, Wisconsin, USA.
Quinlan FurumoBlood Research Institute, Versiti Wisconsin, Milwaukee, Wisconsin, USA.
Kirthi PulakantiBlood Research Institute, Versiti Wisconsin, Milwaukee, Wisconsin, USA.
Jon BrandtDepartment of Pediatrics, Division of Hematology/Oncology, Hospital Sisters Heath System St. Vincent Hospital, Green Bay, Wisconsin, USA.
Michael J BurkeDepartment of Pediatrics, Division of Hematology, Oncology and Marrow Transplant, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Sridhar RaoBlood Research Institute, Versiti Wisconsin, Milwaukee, Wisconsin, USA.
Versiti Blood Center of Wisconsin · USMedical College of Wisconsin · USCincinnati Children's Hospital Medical Center · USSt. Vincent Hospital · US

Funding

J. NRSA Training CoreTL1TR001437 · NCATS · MEDICAL COLLEGE OF WISCONSIN · PI THOMAS, DANNY GEORGE · 2015 to 2024
$3.7M
RESEARCH TRAINING IN TRANSFUSION SCIENCET32HL007209 · NHLBI · VERSITI WISCONSIN, INC. · PI WHITE, II, GILBERT C. · 1985 to 2019
$2.9M
Cohesin Mutations in Acute Myelogenous LeukemiaR01CA204231 · NCI · VERSITI WISCONSIN, INC. · PI RAO, SRIDHAR · 2017 to 2021
$1.9M
NCATS NIH HHS TL1 TR001437NCI NIH HHS R01 CA204231NHLBI NIH HHS T32 HL007209
6 · The paper itself

Abstract

backgroundAcute lymphoblastic leukemia (ALL) is the most common hematologic malignancy in children, representing 25% of all new cancer diagnoses. Advances in genomic sequencing have demonstrated that inherited genetic risk factors play a larger role in leukemia development than previously appreciated.

aimWe identified a father-daughter dyad with childhood B-cell ALL and aimed to investigate whether the pair shared a gene associated with leukemia predisposition.

methodsWe performed whole exome sequencing on their leukemia and germline samples and RNA-seq on their leukemia samples.

resultsWe discovered a novel germline chromosomal structural variant in chromosome 1q32.2 within the TRAF3IP3 gene. TRAF3IP3 regulates B-cell lymphopoiesis, and this mutation likely resulted in a predisposition to leukemia by causing expansion of immature B-cell precursors which are highly vulnerable to secondary somatic mutations. Based on the lack of concordance in the somatic mutational profiles between this dyad's leukemia samples, we suspect that the acquired somatic mutations rather than this germline mutation are what dictated their leukemia phenotypes, which we confirmed through RNA-seq by comparing to sporadic cases of B-cell ALL.

conclusionThis research may have identified a novel gene involved in leukemogenesis which may also be involved in de novo cases of ALL. Additional studies are needed to further characterize this TRAF3IP3 structural variant, the co-occurring somatic mutations within these leukemia samples and their combined role in leukemogenesis.

Indexed as

AdultChildChild, PreschoolDNA Mutational AnalysisExome SequencingFemaleGenetic Predisposition to DiseaseGerm-Line MutationHumansMaleMicrotubule-Associated ProteinsPrecursor Cell Lymphoblastic Leukemia-LymphomaRNA-SeqMicrotubule-Associated ProteinsTNF receptor-associated factor 3 interacting protein 3, humandyadfamilial ALLfamilial leukemiainherited leukemialeukemia predispositionpediatric acute lymphoblastic leukemiaTRAF3IP3

Identifiers

PMID33503336
PMCPMC8222551
OpenAlexW3125562183

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.