Evidence map›Paper›PMID 33501884›Full record

ArticleAmerican journal of physiology. Gastrointestinal and liver physiology2021

Noninvasive stratification of nonalcoholic fatty liver disease by whole transcriptome cell-free mRNA characterization.

Naga Chalasani, Shusuke Toden, John J Sninsky, Richard P Rava, Jerome V Braun, Samer Gawrieh, Jiali Zhuang, Michael Nerenberg, Stephen R Quake, Tara Maddala

Abstract readValidation Study
In one paragraph

Article in American journal of physiology. Gastrointestinal and liver physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
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  7. Liquid Biopsy: A Game Changer for Type 2 Diabetes.International journal of molecular sciences · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Naga ChalasaniDivision of Gastroenterology and Hepatology, Department of Medicine, Indiana University School of Medicine, Indianapolis, Indiana.
Shusuke TodenMolecular Stethoscope, San Diego, California.
John J SninskyMolecular Stethoscope, San Diego, California.
Richard P RavaMolecular Stethoscope, San Diego, California.
Jerome V BraunMolecular Stethoscope, San Diego, California.
Samer GawriehDivision of Gastroenterology and Hepatology, Department of Medicine, Indiana University School of Medicine, Indianapolis, Indiana.
Jiali ZhuangMolecular Stethoscope, San Diego, California.
Michael NerenbergMolecular Stethoscope, San Diego, California.
Stephen R QuakeDepartments of Bioengineering and Applied Physics, Stanford University and Chan Zuckerberg Biohub, Stanford, California.
Tara MaddalaMolecular Stethoscope, San Diego, California.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatic fibrosis stage is the most important determinant of outcomes in patients with nonalcoholic fatty liver disease (NAFLD). There is an urgent need for noninvasive tests that can accurately stage fibrosis and determine efficacy of interventions. Here, we describe a novel cell-free (cf)-mRNA sequencing approach that can accurately and reproducibly profile low levels of circulating mRNAs and evaluate the feasibility of developing a cf-mRNA-based NAFLD fibrosis classifier. Using separate discovery and validation cohorts with biopsy-confirmed NAFLD (

Indexed as

Gene Expression ProfilingRNA-SeqTranscriptomeBiopsyCell-Free Nucleic AcidsFeasibility StudiesHumansNon-alcoholic Fatty Liver DiseasePredictive Value of TestsProspective StudiesReproducibility of ResultsRetrospective StudiesRNA, MessengerSeverity of Illness IndexCell-Free Nucleic AcidsRNA, Messengercell-free mRNAclassification biomarkerNASHnonalcoholic fatty liver diseasenonalcoholic steatohepatitis

Identifiers

PMID33501884
PMCPMC8238173

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.