Evidence map›Paper›PMID 33501784›Full record

ArticleThoracic cancer2021

Identification of small proline-rich protein 1B (SPRR1B) as a prognostically predictive biomarker for lung adenocarcinoma by integrative bioinformatic analysis.

Zihe Zhang, Ruifeng Shi, Songlin Xu, Yongwen Li, Hongbing Zhang, Minghui Liu, Guangsheng Zhu, Chen Chen, Zhenhua Pan, Hongyu Liu and 1 more

Open access · goldAbstract read
In one paragraph

Article in Thoracic cancer, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Zihe ZhangDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Ruifeng ShiDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Songlin XuDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Yongwen LiTianjin Key Laboratory of Lung Cancer Metastasis and Tumor Microenvironment, Tianjin Lung Cancer Institute, Tianjin Medical University General Hospital, Tianjin, China.
Hongbing ZhangDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Minghui LiuDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Guangsheng ZhuDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Chen ChenTianjin Key Laboratory of Lung Cancer Metastasis and Tumor Microenvironment, Tianjin Lung Cancer Institute, Tianjin Medical University General Hospital, Tianjin, China.
Zhenhua PanTianjin Key Laboratory of Lung Cancer Metastasis and Tumor Microenvironment, Tianjin Lung Cancer Institute, Tianjin Medical University General Hospital, Tianjin, China.
Hongyu LiuTianjin Key Laboratory of Lung Cancer Metastasis and Tumor Microenvironment, Tianjin Lung Cancer Institute, Tianjin Medical University General Hospital, Tianjin, China.
Jun ChenDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.ORCID 0000-0002-2362-5359
Tianjin Medical University General Hospital · CNShihezi University · CN

Funding

Key Project of Xinjiang Corps Science and Technology Research Plan S2020AB1779National Natural Science Foundation of China 61973232National Natural Science Foundation of China 81773207National Natural Science Foundation of China 82072595Natural Science Foundation of Tianjin City 17YFZCSY00840Natural Science Foundation of Tianjin City 18PTZWHZ00240Natural Science Foundation of Tianjin City 19JCYBJC27000Natural Science Foundation of Tianjin City 19YFZCSY00040Shihezi University Oasis Scholars Research Startup Project LX202002Special Support Program for the High Tech Leader and Team of Tianjin City TJTZJH-GCCCXCYTD-2-6
6 · The paper itself

Abstract

backgroundWith the ongoing development of targeted therapy and immunotherapy in recent years, the overall five-year survival rate of NSCLC patients has not improved, and the search for novel diagnostic and prognostic markers for lung adenocarcinoma continues.

methodsLung adenocarcinoma (LUAD) gene expression data and relevant clinical information were obtained from the TCGA. Hub genes were identified with weighted gene co-expression network analysis (WGCNA) and protein-protein interaction network (PPI). Survival analyses were also performed using GEPIA. The 536 LUAD patients were divided into two groups according to the SPRR1B expression level and analyzed by gene set enrichment analysis (GSEA) and verified by immunoblotting. The effects of SPRR1B on cell proliferation and cell metastasis and apoptosis were evaluated by 5-ethynyl-2'-deoxyuridine (EdU) staining, colony formation assay, transwell migration and invasion assay, and flow cytometry, respectively.

resultsA total of 2269 DEGs were analyzed by WGCNA and five hub genes (CCK, FETUB, PCSK9, SPRR1B, and SPRR2D) were identified. Among them, SPRR1B was selected as one of the most significant prognostic genes in LUAD. SPRR1B was found to be highly expressed in lung adenocarcinoma cells compared with that in normal bronchial epithelial cells. In addition, silencing of SPRR1B could inhibit the cell proliferation, invasion, and migration of lung adenocarcinoma cells, but induced cell apoptosis and G2/M phase arrest in vitro. The result of GSEA and immunoblotting revealed that SPRR1B activated the MAPK signaling pathway involved in the proliferation and metastasis of lung cancer.

conclusionsOur findings demonstrate that SPRR1B may function as a prognosis predictor in lung adenocarcinoma.

Indexed as

Adenocarcinoma of LungApoptosisBiomarkers, TumorCell ProliferationComputational BiologyCornified Envelope Proline-Rich ProteinsFemaleHumansMalePrognosisBiomarkers, TumorCornified Envelope Proline-Rich ProteinsSPRR1B protein, humanbiomarker predictornon-small cell lung cancer (NSCLC)prognosissmall proline-rich protein 1B (SPRR1B)

Identifiers

PMID33501784
PMCPMC7952803
OpenAlexW3125088540

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.