Evidence map›Paper›PMID 33501431›Full record

ArticleResearch square2021

Correlative Multi-scale Cryo-imaging Unveils SARS-CoV-2 Assembly and Egress.

Peijun Zhang, Luiza Mendonca, Andrew Howe, James Gilchrist, Dapeng Sun, Michael Knight, Laura Zanetti-Domingues, Benji Bateman, Anna-Sophia Krebs, Long Chen and 10 more

Open access · greenAbstract readPreprint
In one paragraph

Article in Research square, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 9 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 3 countries.

Peijun ZhangUniversity of Oxford.ORCID 0000-0003-1803-691X
Luiza MendoncaUniversity of Oxford.ORCID 0000-0002-9210-9139
Andrew HoweDiamond Light Source.
James GilchristDiamond Light Source.
Dapeng SunUniversity of Pittsburgh.ORCID 0000-0003-0220-8844
Michael KnightUniversity of Oxford.ORCID 0000-0002-8780-1630
Laura Zanetti-DominguesScience & Technology Facilities Council.ORCID 0000-0003-0514-3185
Benji BatemanResearch Complex at Harwell.ORCID 0000-0003-4580-4662
Anna-Sophia KrebsUniversity of Oxford.
Long ChenUniversity of Oxford.
Julika RadeckeDiamond Light Source.ORCID 0000-0002-5815-5537
Yuewen ShengDiamond Light Source.
Vivian LiUniversity of Cambridge.
Tao NiUniversity of Oxford.ORCID 0000-0001-7268-0306
Ilias KounatidisDiamond Light Source.
Mohamed KoronfelDiamond Light Source.
Marta SzynkiewiczCentral Laser Facility.
Maria HarkiolakiDiamond Light Source.ORCID 0000-0001-8091-9057
Marisa Martin-FernandezRutherford Appleton Laboratory.ORCID 0000-0001-5496-6300
William JamesUniversity of Oxford.ORCID 0000-0002-2506-1198
University of Pittsburgh · USDiamond Light Source · GBRutherford Appleton Laboratory · GBScience and Technology Facilities Council · GB

Funding

Technology Development 2: MAS NMR and dynamic nuclear polarization for HIV-1 structural biologyP50AI150481 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRONENBORN, ANGELA M. · 2019 to 2021
$14.1M
NIAID NIH HHS P50 AI150481Wellcome Trust
6 · The paper itself

Abstract

Since the outbreak of the SARS-CoV-2 pandemic, there have been intense structural studies on purified recombinant viral components and inactivated viruses. However, structural and ultrastructural evidence on how the SARS-CoV-2 infection progresses in the frozen-hydrated native cellular context is scarce, and there is a lack of comprehensive knowledge on the SARS-CoV-2 replicative cycle. To correlate the cytopathic events induced by SARS-CoV-2 with virus replication process under the frozen-hydrated condition, here we established a unique multi-modal, multi-scale cryo-correlative platform to image SARS-CoV-2 infection in Vero cells. This platform combines serial cryoFIB/SEM volume imaging and soft X-ray cryo-tomography with cell lamellae-based cryo-electron tomography (cryoET) and subtomogram averaging. The results place critical SARS-CoV-2 structural events â€" e.g. viral RNA transport portals on double membrane vesicles, virus assembly and budding intermediates, virus egress pathways, and native virus spike structures from intracellular assembled and extracellular released virus - in the context of whole-cell images. The latter revealed numerous heterogeneous cytoplasmic vesicles, the formation of membrane tunnels through which viruses exit, and the drastic cytoplasm invasion into the nucleus. This integrated approach allows a holistic view of SARS-CoV-2 infection, from the whole cell to individual molecules.

Identifiers

PMID33501431
PMCPMC7836121
OpenAlexW4247776038

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.