Evidence map›Paper›PMID 33500458›Full record

ArticleScientific reports2021

Abnormal promoter DNA hypermethylation of the integrin, nidogen, and dystroglycan genes in breast cancer.

Vladimir V Strelnikov, Ekaterina B Kuznetsova, Alexander S Tanas, Viktoria V Rudenko, Alexey I Kalinkin, Elena V Poddubskaya, Tatiana V Kekeeva, Galina G Chesnokova, Ivan D Trotsenko, Sergey S Larin and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 37 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Vladimir V StrelnikovEpigenetics Laboratory, Research Centre for Medical Genetics, Moskvorechie St 1, 115522, Moscow, Russia. vstrel@list.ru.
Ekaterina B KuznetsovaEpigenetics Laboratory, Research Centre for Medical Genetics, Moskvorechie St 1, 115522, Moscow, Russia.
Alexander S TanasEpigenetics Laboratory, Research Centre for Medical Genetics, Moskvorechie St 1, 115522, Moscow, Russia.
Viktoria V RudenkoMolecular Genetic Diagnostics Laboratory 2, Research Centre for Medical Genetics, Moskvorechie St 1, 115522, Moscow, Russia.
Alexey I KalinkinEpigenetics Laboratory, Research Centre for Medical Genetics, Moskvorechie St 1, 115522, Moscow, Russia.
Elena V PoddubskayaClinic of Personalized Medicine, I.M. Sechenov First Moscow State Medical University (Sechenov University), Trubetskaya St 8-2, 119991, Moscow, Russia.
Tatiana V KekeevaEpigenetics Laboratory, Research Centre for Medical Genetics, Moskvorechie St 1, 115522, Moscow, Russia.
Galina G ChesnokovaEpigenetics Laboratory, Research Centre for Medical Genetics, Moskvorechie St 1, 115522, Moscow, Russia.
Ivan D TrotsenkoInstitute of Medicine, Peoples' Friendship University of Russia (RUDN University), Miklukho-Maklaya St 6, 117198, Moscow, Russia.
Sergey S LarinMolecular Immunology Laboratory, Federal Scientific Clinical Centre of Pediatric Hematology Oncology Immunology Named After Dmitry Rogachev, Samory Mashela St 1, 117997, Moscow, Russia.
Sergey I KutsevEpigenetics Laboratory, Research Centre for Medical Genetics, Moskvorechie St 1, 115522, Moscow, Russia.
Dmitry V ZaletaevEpigenetics Laboratory, Research Centre for Medical Genetics, Moskvorechie St 1, 115522, Moscow, Russia.
Marina V NemtsovaEpigenetics Laboratory, Research Centre for Medical Genetics, Moskvorechie St 1, 115522, Moscow, Russia.
Olga A SimonovaMolecular Genetic Diagnostics Laboratory 2, Research Centre for Medical Genetics, Moskvorechie St 1, 115522, Moscow, Russia.
Research Centre for Medical Genetics · RUInstitute of Biomedical Chemistry · RUInstitute of Gene Biology · RUPeoples' Friendship University of Russia · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell transmembrane receptors and extracellular matrix components play a pivotal role in regulating cell activity and providing for the concerted integration of cells in the tissue structures. We have assessed DNA methylation in the promoter regions of eight integrin genes, two nidogen genes, and the dystroglycan gene in normal breast tissues and breast carcinomas (BC). The protein products of these genes interact with the basement membrane proteins LAMA1, LAMA2, and LAMB1; abnormal hypermethylation of the LAMA1, LAMA2, and LAMB1 promoters in BC has been described in our previous publications. In the present study, the frequencies of abnormal promoter hypermethylation in BC were 13% for ITGA1, 31% for ITGA4, 4% for ITGA7, 39% for ITGA9, 38% for NID1, and 41% for NID2. ITGA2, ITGA3, ITGA6, ITGB1, and DAG1 promoters were nonmethylated in normal and BC samples. ITGA4, ITGA9, and NID1 promoter hypermethylation was associated with the HER2 positive tumors, and promoter hypermethylation of ITGA1, ITGA9, NID1 and NID2 was associated with a genome-wide CpG island hypermethylated BC subtype. Given that ITGA4 is not expressed in normal breast, one might suggest that its abnormal promoter hypermethylation in cancer is non-functional and is thus merely a passenger epimutation. Yet, this assumption is not supported by our finding that it is not associated with a hypermethylated BC subtype. ITGA4 acquires expression in a subset of breast carcinomas, and methylation of its promoter may be preventive against expression in some tumors. Strong association of abnormal ITGA4 hypermethylation with the HER2 positive tumors (p = 0.0025) suggests that simultaneous presence of both HER2 and integrin α4 receptors is not beneficial for tumor cells. This may imply HER2 and integrin α4 signaling pathways interactions that are yet to be discovered.

Indexed as

Gene Expression Regulation, NeoplasticPromoter Regions, GeneticAllelesBreast NeoplasmsCell Line, TumorCpG IslandsDNA MethylationDystroglycansErb-b2 Receptor Tyrosine KinasesFemaleHumansIntegrinsIntronsMembrane GlycoproteinsDystroglycansErb-b2 Receptor Tyrosine KinasesIntegrinsMembrane Glycoproteinsnidogen

Identifiers

PMID33500458
PMCPMC7838398
OpenAlexW3122125777

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.