Evidence map›Paper›PMID 33499041›Full record

ArticleInternational journal of molecular sciences2021

Application of 5-Methylcytosine DNA Glycosylase to the Quantitative Analysis of DNA Methylation.

Woo Lee Choi, Young Geun Mok, Jin Hoe Huh

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Editorial: DNA Methylation Dynamics and Human Diseases.Frontiers in cell and developmental biology · 2022
    Article
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Woo Lee ChoiDepartment of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Korea.ORCID 0000-0002-5875-8434
Young Geun MokInterdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul 08826, Korea.
Jin Hoe HuhDepartment of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Korea.
Seoul National University · KR

Funding

Rural Development Administration PJ013440
6 · The paper itself

Abstract

In higher eukaryotes DNA methylation is a prominent epigenetic mark important for chromatin structure and gene expression. Thus, profiling DNA methylation is important for predicting gene expressions associated with specific traits or diseases. DNA methylation is achieved by DNA methyltransferases and can be actively removed by specific enzymes in a replication-independent manner. DEMETER (DME) is a bifunctional 5-methylcytosine (5mC) DNA glycosylase responsible for active DNA demethylation that excises 5mC from DNA and cleaves a sugar-phosphate bond generating a single strand break (SSB). In this study, DME was used to analyze DNA methylation levels at specific epialleles accompanied with gain or loss of DNA methylation. DME treatment on genomic DNA generates SSBs in a nonsequence-specific fashion proportional to 5mC density, and thus DNA methylation levels can be easily measured when combined with the quantitative PCR (qPCR) method. The DME-qPCR analysis was applied to measure DNA methylation levels at the

Indexed as

DNA MethylationGene Expression Regulation, PlantAllelesArabidopsisArabidopsis ProteinsDNADNA DemethylationDNA GlycosylasesEpigenesis, GeneticHomeodomain ProteinsMutationPhenotypePolymerase Chain ReactionSequence Analysis, DNASolanum lycopersicumTranscription Factors5-methylcytosine-DNA glycosylaseArabidopsis ProteinsDNADNA GlycosylasesFWA protein, ArabidopsisHomeodomain ProteinsTranscription FactorsDEMETERDNA demethylaseDNA methylationepialleleepigenetic profiling

Identifiers

PMID33499041
PMCPMC7865733
OpenAlexW3124738262

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.