Evidence map›Paper›PMID 33495758›Full record

ArticleCell reports. Medicine2021

Epitope-resolved profiling of the SARS-CoV-2 antibody response identifies cross-reactivity with endemic human coronaviruses.

Jason T Ladner, Sierra N Henson, Annalee S Boyle, Anna L Engelbrektson, Zane W Fink, Fatima Rahee, Jonathan D'ambrozio, Kurt E Schaecher, Mars Stone, Wenjuan Dong and 12 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports. Medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 135 papers.

0numbers the graph read from it
0cells of the map it votes in
135citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

135 citing papers in PubMed, 218 citations in OpenAlex.

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  20. Vaccination versus natural infection: A review of antibody differentiation techniques.Journal of research in medical sciences : the official journal of Isfahan University of Medical Sciences · 2025
    Review

75 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 7 institutions in 2 countries.

Jason T LadnerThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.
Sierra N HensonThe Translational Genomics Research Institute (TGen), Phoenix and Flagstaff, AZ, USA.
Annalee S BoyleThe Translational Genomics Research Institute (TGen), Phoenix and Flagstaff, AZ, USA.
Anna L EngelbrektsonThe Translational Genomics Research Institute (TGen), Phoenix and Flagstaff, AZ, USA.
Zane W FinkThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.
Fatima RaheeThe Translational Genomics Research Institute (TGen), Phoenix and Flagstaff, AZ, USA.
Jonathan D'ambrozioWalter Reed National Military Medical Center, Bethesda, MD, USA.
Kurt E SchaecherWalter Reed National Military Medical Center, Bethesda, MD, USA.
Mars StoneVitalant Research Institute and Department of Laboratory Medicine, University of California, San Francisco, San Francisco, CA, USA.
Wenjuan DongHematologic Malignancies and Stem Cell Transplantation Institute, City of Hope National Medical Center, Duarte, CA, USA.
Sanjeet DadwalDivision of Infectious Diseases, City of Hope National Medical Center, Duarte, CA, USA.
Jianhua YuHematologic Malignancies and Stem Cell Transplantation Institute, City of Hope National Medical Center, Duarte, CA, USA.
Michael A CaligiuriHematologic Malignancies and Stem Cell Transplantation Institute, City of Hope National Medical Center, Duarte, CA, USA.
Piotr CieplakSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Magnar BjøråsDepartment of Clinical and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, Norway.
Mona H FenstadDepartment of Clinical and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, Norway.
Svein A NordbøDepartment of Clinical and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, Norway.
Denis E KainovDepartment of Clinical and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, Norway.
Norihito MuranakaEncodia, San Diego, CA, USA.
Mark S CheeEncodia, San Diego, CA, USA.
Sergey A ShiryaevSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
John A AltinThe Translational Genomics Research Institute (TGen), Phoenix and Flagstaff, AZ, USA.
Translational Genomics Research Institute · USCity Of Hope National Medical Center · USNorwegian University of Science and Technology · NONorthern Arizona University · USSanford Burnham Prebys Medical Discovery Institute · USWalter Reed National Military Medical Center · USPacific Research Institute · US

Funding

SSCIMA: Integrating Analysis of Socio-economic Sub-population Dynamics to Improve Spatial Models of Infectious DiseaseU54MD012388 · NIMHD · NORTHERN ARIZONA UNIVERSITY · PI Julie A. Baldwin · 2017 to 2026
$49.7M
Human natural killer cells: Advancing biology and clinical applicationsR35CA210087 · NCI · OHIO STATE UNIVERSITY · PI MICHAEL A CALIGIURI · 2017 to 2026
$8.3M
A scalable platform for highly-multiplexed analysis of antibody reactivity from <1uL of bloodU24AI152172 · NIAID · TRANSLATIONAL GENOMICS RESEARCH INST · PI ALTIN, JOHN · 2020 to 2024
$3.3M
Characterizing and Targeting the Novel IL-15- AKT-XBP1s Pathway in NK CellsR01CA247550 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI YU, JIANHUA · 2020 to 2024
$2.2M
Elucidate and Modulate Cell Signaling in NK Cells for Glioma TreatmentR01AI129582 · NIAID · OHIO STATE UNIVERSITY · PI YU, JIANHUA · 2017 to 2021
$2.1M
Overcoming Barriers of Virotherapy by Next-Generation oHSV Expressing E-CadherinR01NS106170 · NINDS · OHIO STATE UNIVERSITY · PI YU, JIANHUA · 2018 to 2023
$1.9M
scFvPD1-FLT3 CAR T Cells for the Treatment of Relapsed Acute Myeloid LeukemiaR21CA223400 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI YU, JIANHUA · 2019 to 2020
$414k
NCI NIH HHS R01 CA247550NCI NIH HHS R21 CA223400NCI NIH HHS R35 CA210087NIAID NIH HHS R01 AI129582NIAID NIH HHS U24 AI152172NIMHD NIH HHS U54 MD012388NINDS NIH HHS R01 NS106170
6 · The paper itself

Abstract

The SARS-CoV-2 proteome shares regions of conservation with endemic human coronaviruses (CoVs), but it remains unknown to what extent these may be cross-recognized by the antibody response. Here, we study cross-reactivity using a highly multiplexed peptide assay (PepSeq) to generate an epitope-resolved view of IgG reactivity across all human CoVs in both COVID-19 convalescent and negative donors. PepSeq resolves epitopes across the SARS-CoV-2 Spike and Nucleocapsid proteins that are commonly targeted in convalescent donors, including several sites also recognized in some uninfected controls. By comparing patterns of homologous reactivity between CoVs and using targeted antibody-depletion experiments, we demonstrate that SARS-CoV-2 elicits antibodies that cross-recognize pandemic and endemic CoV antigens at two Spike S2 subunit epitopes. We further show that these cross-reactive antibodies preferentially bind endemic homologs. Our findings highlight sites at which the SARS-CoV-2 response appears to be shaped by previous CoV exposures and which have the potential to raise broadly neutralizing responses.

Indexed as

antibody responsecross-reactivityendemic CoVshighly multiplexed serologySARS-CoV-2

Identifiers

PMID33495758
PMCPMC7816965
OpenAlexW3124415907

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.