Evidence map›Paper›PMID 33495500›Full record

ArticleScientific reports2021

Comparative transcriptomics and host-specific parasite gene expression profiles inform on drivers of proliferative kidney disease.

Marc Faber, Sophie Shaw, Sohye Yoon, Eduardo de Paiva Alves, Bei Wang, Zhitao Qi, Beth Okamura, Hanna Hartikainen, Christopher J Secombes, Jason W Holland

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The Tilapia Cyst Tissue Enclosing the ProliferatingInternational journal of molecular sciences · 2024
    Article
  5. The myxozoansFrontiers in cellular and infection microbiology · 2024
    Article
  6. The Molecular Mechanisms Employed by the ParasiteInternational journal of molecular sciences · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Identification ofFrontiers in cellular and infection microbiology · 2022
    Article
  13. Article
  14. Article
  15. Proteases as Therapeutic Targets Against the Parasitic CnidarianFrontiers in cellular and infection microbiology · 2021
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Marc FaberScottish Fish Immunology Research Centre, University of Aberdeen, Aberdeen, AB24 2TZ, UK.
Sophie ShawCentre for Genome Enabled Biology and Medicine, University of Aberdeen, Aberdeen, AB24 2TZ, UK.
Sohye YoonScottish Fish Immunology Research Centre, University of Aberdeen, Aberdeen, AB24 2TZ, UK.
Eduardo de Paiva AlvesCentre for Genome Enabled Biology and Medicine, University of Aberdeen, Aberdeen, AB24 2TZ, UK.
Bei WangScottish Fish Immunology Research Centre, University of Aberdeen, Aberdeen, AB24 2TZ, UK.
Zhitao QiScottish Fish Immunology Research Centre, University of Aberdeen, Aberdeen, AB24 2TZ, UK.
Beth OkamuraDepartment of Life Sciences, The Natural History Museum, London, SW7 5BD, UK.
Hanna HartikainenSchool of Life Sciences, University of Nottingham, Nottingham, NG7 2RD, UK.
Christopher J SecombesScottish Fish Immunology Research Centre, University of Aberdeen, Aberdeen, AB24 2TZ, UK.
Jason W HollandScottish Fish Immunology Research Centre, University of Aberdeen, Aberdeen, AB24 2TZ, UK. j.holland@abdn.ac.uk.
University of Aberdeen · GBNatural History Museum · GBScience Oxford · GBUniversity of Nottingham · GBUniversity of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The myxozoan parasite, Tetracapsuloides bryosalmonae has a two-host life cycle alternating between freshwater bryozoans and salmonid fish. Infected fish can develop Proliferative Kidney Disease, characterised by a gross lymphoid-driven kidney pathology in wild and farmed salmonids. To facilitate an in-depth understanding of T. bryosalmonae-host interactions, we have used a two-host parasite transcriptome sequencing approach in generating two parasite transcriptome assemblies; the first derived from parasite spore sacs isolated from infected bryozoans and the second from infected fish kidney tissues. This approach was adopted to minimize host contamination in the absence of a complete T. bryosalmonae genome. Parasite contigs common to both infected hosts (the intersect transcriptome; 7362 contigs) were typically AT-rich (60-75% AT). 5432 contigs within the intersect were annotated. 1930 unannotated contigs encoded for unknown transcripts. We have focused on transcripts encoding proteins involved in; nutrient acquisition, host-parasite interactions, development, cell-to-cell communication and proteins of unknown function, establishing their potential importance in each host by RT-qPCR. Host-specific expression profiles were evident, particularly in transcripts encoding proteases and proteins involved in lipid metabolism, cell adhesion, and development. We confirm for the first time the presence of homeobox proteins and a frizzled homologue in myxozoan parasites. The novel insights into myxozoan biology that this study reveals will help to focus research in developing future disease control strategies.

Indexed as

Gene Expression ProfilingAnimalsBryozoaDNAFish DiseasesFrizzled ReceptorsGene Expression RegulationGene OntologyGenes, DevelopmentalGenes, HomeoboxGenomeHost-Parasite InteractionsKidney DiseasesMolecular Sequence AnnotationParasitesTranscriptomeDNAFrizzled Receptors

Identifiers

PMID33495500
PMCPMC7835236
OpenAlexW3105010241

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.