Evidence map›Paper›PMID 33492921›Full record

SynthesisClinical and translational gastroenterology2021

Meta-Analysis Reveals the Prognostic Relevance of Nuclear and Membrane-Associated Bile Acid Receptors in Gastric Cancer.

Michael Rohr, Jihad Aljabban, Trina Rudeski-Rohr, Spencer Lessans, Sai Preethi Nakkina, Dexter Hadley, Xiang Zhu, Deborah A Altomare

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Clinical and translational gastroenterology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Michael RohrBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida, Orlando, Florida, USA.
Jihad AljabbanDepartment of Medicine, School of Medicine and Public Health, University of Wisconsin, Madison, Wisconsin, USA.
Trina Rudeski-RohrBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida, Orlando, Florida, USA.
Spencer LessansBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida, Orlando, Florida, USA.
Sai Preethi NakkinaBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida, Orlando, Florida, USA.
Dexter HadleyDepartment of Clinical Sciences, College of Medicine, University of Central Florida, Orlando, Florida, USA.
Xiang ZhuBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida, Orlando, Florida, USA.
Deborah A AltomareBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida, Orlando, Florida, USA.
University of Central Florida · USUniversity of Wisconsin–Madison · US

Funding

Crowd-Assisted Deep Learning (CrADLe) Digital Curation to Translate Big Data into Precision MedicineU01LM012675 · NLM · UNIVERSITY OF CENTRAL FLORIDA · PI HADLEY, DEXTER D · 2017 to 2020
$2.1M
Crowd-sourcing A STAR Functional Genomic Characterization of Cancer with Open Big DataUH2CA203792 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HADLEY, DEXTER D · 2016 to 2017
$634k
The Role of Klotho Beta in Colorectal Cancer TumorigenesisF30CA257492 · NCI · UNIVERSITY OF CENTRAL FLORIDA · PI ROHR, MICHAEL W · 2021 to 2023
$97k
NCI NIH HHS F30 CA257492NCI NIH HHS UH2 CA203792NLM NIH HHS U01 LM012675
6 · The paper itself

Abstract

introductionBile acids (BAs) arising from duodenogastric reflux are known to facilitate gastric cancer (GC) development. Although BAs traditionally contribute to carcinogenesis through direct cellular cytotoxicity, increasing evidence implicates nuclear and membrane BA receptors (BARs) as additional factors influencing cancer risk. Indeed, some BARs are already linked with GC, but conflicting evidence and lack of information regarding other endogenous BARs warrant further investigation. In this study, we meta-analyzed multiple data sets to identify clinically relevant relationships between BAR expression and prognosis, clinicopathology, and activity in GC.

methodsWe collected transcriptomic data from the Gene Expression Omnibus and The Cancer Genome Atlas to analyze associations between BAR expression and GC prognosis, subtype, and clinicopathology. We also used Ingenuity Pathway Analysis to assess and predict functions, upstream regulators, and downstream mediators of membrane and nuclear BARs in GC.

resultsBARs showed differential distribution in GC; membrane BARs (G protein-coupled BAR 1, sphingosine-1-phosphate receptor 2, and cholinergic receptor muscarinic 2) were enriched in diffuse-, genome-stable, and mesenchymal-type tumors, whereas nuclear BARs (pregnane-X-receptor, constitutive androstane receptor, and farnesoid-X-receptor) were enriched in chromosome instability and metabolic subtypes. High expression of all membrane but not nuclear BARs was associated with poor prognosis and unfavorable GC clinicopathologic features. Similarly, expression patterns of membrane but not nuclear BARs varied geographically, aligning with Helicobacter pylori infection and GC mortality rates. Finally, GC-related oncogenes, namely transforming growth factor β1, were associated with membrane BARs, whereas many metabolic-associated genes were associated with nuclear BARs. DISCUSSION: Through transcriptomic meta-analysis, we identified distinct expression profiles between nuclear and membrane BARs that demonstrate prognostic relevance and warrant further investigation.

Indexed as

Bile Acids and SaltsCell NucleusHumansNuclear EnvelopePrognosisReceptors, G-Protein-CoupledReceptors, MuscarinicSphingosine-1-Phosphate ReceptorsStomach NeoplasmsBile Acids and SaltsReceptors, G-Protein-CoupledReceptors, MuscarinicSphingosine-1-Phosphate Receptors

Identifiers

PMID33492921
PMCPMC7806235
OpenAlexW3125886607

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.