Evidence map›Paper›PMID 33492712›Full record

ArticleMicrobial biotechnology2021

An unusual overrepresentation of genetic factors related to iron homeostasis in the genome of the fluorescent Pseudomonas sp. ABC1.

Daniel Valenzuela-Heredia, Carlos Henríquez-Castillo, Raúl Donoso, Paris Lavín, Michael T Ringel, Thomas Brüser, José Luis Campos

Open access · goldAbstract read
In one paragraph

Article in Microbial biotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Daniel Valenzuela-HerediaFacultad de Ingeniería y Ciencias, Universidad Adolfo Ibáñez, Viña del Mar, Chile.ORCID 0000-0002-4028-4461
Carlos Henríquez-CastilloLaboratorio de Fisiología y Genética Marina (FIGEMA), Centro de Estudios Avanzados de Zonas Áridas (CEAZA), Coquimbo, Chile.ORCID 0000-0001-7763-8350
Raúl DonosoPrograma Institucional de Fomento a la Investigación, Desarrollo, e Innovación (PIDi), Universidad Tecnológica Metropolitana, Santiago, Chile.
Paris LavínFacultad de Ciencias del Mar y Recursos Biológicos, Departamento de Biotecnología, Laboratorio de Complejidad Microbiana y Ecología Funcional, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile.ORCID 0000-0002-8893-526X
Michael T RingelInstitute of Microbiology, Leibniz University Hannover, Hannover, Germany.
Thomas BrüserInstitute of Microbiology, Leibniz University Hannover, Hannover, Germany.ORCID 0000-0002-5889-8306
José Luis CamposFacultad de Ingeniería y Ciencias, Universidad Adolfo Ibáñez, Viña del Mar, Chile.ORCID 0000-0001-5750-1699
Adolfo Ibáñez University · CLLeibniz University Hannover · DEMetropolitan University of Technology · CLUniversidad Católica del Norte · CLUniversidad de La Frontera · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the genus Pseudomonas inhabit diverse environments, such as soil, water, plants and humans. The variability of habitats is reflected in the diversity of the structure and composition of their genomes. This cosmopolitan bacterial genus includes species of biotechnological, medical and environmental importance. In this study, we report on the most relevant genomic characteristics of Pseudomonas sp. strain ABC1, a siderophore-producing fluorescent strain recently isolated from soil. Phylogenomic analyses revealed that this strain corresponds to a novel species forming a sister clade of the recently proposed Pseudomonas kirkiae. The genomic information reveals an overrepresented repertoire of mechanisms to hoard iron when compared to related strains, including a high representation of fecI-fecR family genes related to iron regulation and acquisition. The genome of the Pseudomonas sp. ABC1 contains the genes for non-ribosomal peptide synthetases (NRPSs) of a novel putative Azotobacter-related pyoverdine-type siderophore, a yersiniabactin-type siderophore and an antimicrobial betalactone; the last two are found only in a limited number of Pseudomonas genomes. Strain ABC1 can produce siderophores in a low-cost medium, and the supernatants from cultures of this strain promote plant growth, highlighting their biotechnological potential as a sustainable industrial microorganism.

Indexed as

PseudomonasSiderophoresHomeostasisHumansIronIronSiderophores

Identifiers

PMID33492712
PMCPMC8085936
OpenAlexW3122030831

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.