Evidence map›Paper›PMID 33492335›Full record

ArticleBioscience reports2021

Comprehensive analysis of tumor mutation burden and immune microenvironment in gastric cancer.

Jie Yu, QianYun Zhang, MengChuan Wang, SiJia Liang, HongYun Huang, Lang Xie, ChunHui Cui, JinLong Yu

Open access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 24 citations in OpenAlex.

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  11. Prognostic value of nicotinamide adenine dinucleotide (NADJournal of gastrointestinal oncology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Jie Yu *Department of General Surgery, Zhujiang Hospital, Southern Medical University, Guangdong, Guangzhou, 510282, P.R. China.
QianYun Zhang *Department of Medical Ultrasound, Guangzhou Women and Children's Medical Center, Guangdong, Guangzhou 510623, P.R. China.
MengChuan Wang *Department of General Surgery, Zhujiang Hospital, Southern Medical University, Guangdong, Guangzhou, 510282, P.R. China.
SiJia LiangDepartment of Pharmacology, Cardiac and Cerebral Vascular Research Center, Zhongshan School of Medicine, Sun Yat-Sen University, Guangzhou 510080, P.R. China.
HongYun HuangDepartment of General Surgery, Zhujiang Hospital, Southern Medical University, Guangdong, Guangzhou, 510282, P.R. China.
Lang XieDepartment of General Surgery, Zhujiang Hospital, Southern Medical University, Guangdong, Guangzhou, 510282, P.R. China.
ChunHui CuiDepartment of General Surgery, Zhujiang Hospital, Southern Medical University, Guangdong, Guangzhou, 510282, P.R. China.
JinLong YuDepartment of General Surgery, Zhujiang Hospital, Southern Medical University, Guangdong, Guangzhou, 510282, P.R. China.
Zhujiang Hospital · CNGuangzhou Women and Children Medical Center · CNSun Yat-sen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tumor mutation burden (TMB) was a promising marker for immunotherapy. We aimed to investigate the prognostic role of TMB and its relationship with immune cells infiltration in gastric cancer (GC). We analyzed the mutation landscape of all GC cases and TMB of each GC patient was calculated and patients were divided into TMB-high and TMB-low group. Differentially expressed genes (DEGs) between the two groups were identified and pathway analysis was performed. The immune cells infiltration in each GC patient was evaluated and Kaplan-Meier analysis was performed to investigate the prognostic role of immune cells infiltration. At last, hub immune genes were identified and a TMB prognostic risk score (TMBPRS) was constructed to predict the survival outcome of GC patients. The relationships between mutants of hub immune genes and immune infiltration level in GC was investigated. We found higher TMB was correlated with better survival outcome and female patients, patients with T1-2 and N0 had higher TMB score. Altogether 816 DEGs were harvested and pathway analysis demonstrated that patients in TMB-high group were associated with neuroactive ligand-receptor interaction, cAMP signaling pathway, calcium signaling pathway. The infiltration of activated CD4+ memory T cells, follicular helper T cells, resting NK cells, M0 and M1 macrophages and neutrophils in TMB-high group were higher compared than that in TMB-low group and high macrophage infiltration was correlated with inferior survival outcome of GC patients. Lastly, the TMBPRS was constructed and GC patients with high TMBPRS had poor prognosis.

Indexed as

MutationTumor MicroenvironmentGene Expression Regulation, NeoplasticHumansStomach NeoplasmsGastric cancerImmune cells infiltrationPrognosisTumor mutation burden

Identifiers

PMID33492335
PMCPMC7921293
OpenAlexW3123186894

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.