Evidence map›Paper›PMID 33490973›Full record

ArticleSTAR protocols2021

Data-deposition protocols for correlative soft X-ray tomography and super-resolution structured illumination microscopy applications.

Andrii Iudin, Ugis Sarkans, Mohamed A Koronfel, Tom Fish, Ian Dobbie, Maria Harkiolaki, Ardan Patwardhan, Gerard J Kleywegt

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in STAR protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Andrii IudinEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Ugis SarkansEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Mohamed A KoronfelDiamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DW, UK.
Tom FishDiamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DW, UK.
Ian DobbieMicron, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
Maria HarkiolakiDiamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DW, UK.
Ardan PatwardhanEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Gerard J KleywegtEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

Funding

Medical Research Council MR/L007835/1Medical Research Council MR/P019544/1
6 · The paper itself

Abstract

This protocol illustrates the steps necessary to deposit correlated 3D cryo-imaging data from cryo-structured illumination microscopy and cryo-soft X-ray tomography with the BioStudies and EMPIAR deposition databases of the European Bioinformatics Institute. There is currently a real need for a robust method of data deposition to ensure unhindered access to and independent validation of correlative light and X-ray microscopy data to allow use in further comparative studies, educational activities, and data mining. For complete details on the use and execution of this protocol, please refer to Kounatidis et al. (2020).

Indexed as

Databases, FactualImaging, Three-DimensionalTomography, X-RayBioinformaticsCell BiologyMicroscopyStructural Biology

Identifiers

PMID33490973
PMCPMC7811169

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.