Evidence map›Paper›PMID 33483497›Full record

ArticleNature communications2021

A functional family of fluorescent nucleotide analogues to investigate actin dynamics and energetics.

Jessica Colombo, Adrien Antkowiak, Konstantin Kogan, Tommi Kotila, Jenna Elliott, Audrey Guillotin, Pekka Lappalainen, Alphée Michelot

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  6. Celebrating 20 years of live single-actin-filament studies with five golden rules.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 3 countries.

Jessica Colombo *Aix Marseille Univ, CNRS, IBDM, Turing Centre for Living Systems, 13288, Marseille, France.
Adrien Antkowiak *Aix Marseille Univ, CNRS, IBDM, Turing Centre for Living Systems, 13288, Marseille, France.ORCID http://orcid.org/0000-0002-3711-5544
Konstantin KoganHiLIFE Institute of Biotechnology, P.O. Box 56, University of Helsinki, 00014, Helsinki, Finland.ORCID http://orcid.org/0000-0003-3270-9391
Tommi KotilaHiLIFE Institute of Biotechnology, P.O. Box 56, University of Helsinki, 00014, Helsinki, Finland.ORCID http://orcid.org/0000-0002-9046-5834
Jenna ElliottAix Marseille Univ, CNRS, IBDM, Turing Centre for Living Systems, 13288, Marseille, France.ORCID http://orcid.org/0000-0002-3703-4234
Audrey GuillotinAix Marseille Univ, CNRS, IBDM, Turing Centre for Living Systems, 13288, Marseille, France.
Pekka LappalainenHiLIFE Institute of Biotechnology, P.O. Box 56, University of Helsinki, 00014, Helsinki, Finland.ORCID http://orcid.org/0000-0001-6227-0354
Alphée MichelotAix Marseille Univ, CNRS, IBDM, Turing Centre for Living Systems, 13288, Marseille, France. alphee.michelot@univ-amu.fr.ORCID http://orcid.org/0000-0003-2023-8094
Centre National de la Recherche Scientifique · FRUniversity of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Actin polymerization provides force for vital processes of the eukaryotic cell, but our understanding of actin dynamics and energetics remains limited due to the lack of high-quality probes. Most current probes affect dynamics of actin or its interactions with actin-binding proteins (ABPs), and cannot track the bound nucleotide. Here, we identify a family of highly sensitive fluorescent nucleotide analogues structurally compatible with actin. We demonstrate that these fluorescent nucleotides bind to actin, maintain functional interactions with a number of essential ABPs, are hydrolyzed within actin filaments, and provide energy to power actin-based processes. These probes also enable monitoring actin assembly and nucleotide exchange with single-molecule microscopy and fluorescence anisotropy kinetics, therefore providing robust and highly versatile tools to study actin dynamics and functions of ABPs.

Indexed as

Actin CytoskeletonActinsAlgorithmsAnimalsFluorescence PolarizationFluorescent DyesHydrolysisKineticsMicrofilament ProteinsModels, TheoreticalMuscle ProteinsNucleotidesProtein BindingRabbitsThermodynamicsActinsFluorescent DyesMicrofilament ProteinsMuscle ProteinsNucleotides

Identifiers

PMID33483497
PMCPMC7822861
OpenAlexW3121410589

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.