Evidence map›Paper›PMID 33483487›Full record

ArticleNature communications2021

Nanobody-mediated control of gene expression and epigenetic memory.

Mike V Van, Taihei Fujimori, Lacramioara Bintu

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
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  5. Article
  6. Programmable nanobody circuits for cell selection.bioRxiv : the preprint server for biology · 2026
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
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  15. Toward DNA-Based Recording of Biological Processes.International journal of molecular sciences · 2024
    Review
  16. Article
  17. Article
  18. Neuroepigenetic Editing.Methods in molecular biology (Clifton, N.J.) · 2024
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mike V VanDepartment of Biology, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0002-8350-5236
Taihei FujimoriDepartment of Bioengineering, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0003-3010-3046
Lacramioara BintuDepartment of Bioengineering, Stanford University, Stanford, CA, 94305, USA. lbintu@stanford.edu.ORCID 0000-0001-5443-6633
Stanford University · US

Funding

Supplement to Enhance Wellness and Resiliency in the Graduate EnvironmentT32GM007276 · NIGMS · STANFORD UNIVERSITY · PI MORRISON, ASHBY J. · 1985 to 2023
$32.9M
Single-cell analysis and synthetic control of mammalian chromatin dynamics and gene regulationR35GM128947 · NIGMS · STANFORD UNIVERSITY · PI Lacramioara Bintu · 2018 to 2026
$3.1M
NIGMS NIH HHS R35 GM128947NIGMS NIH HHS T32 GM007276
6 · The paper itself

Abstract

Targeting chromatin regulators to specific genomic locations for gene control is emerging as a powerful method in basic research and synthetic biology. However, many chromatin regulators are large, making them difficult to deliver and combine in mammalian cells. Here, we develop a strategy for gene control using small nanobodies that bind and recruit endogenous chromatin regulators to a gene. We show that an antiGFP nanobody can be used to simultaneously visualize GFP-tagged chromatin regulators and control gene expression, and that nanobodies against HP1 and DNMT1 can silence a reporter gene. Moreover, combining nanobodies together or with other regulators, such as DNMT3A or KRAB, can enhance silencing speed and epigenetic memory. Finally, we use the slow silencing speed and high memory of antiDNMT1 to build a signal duration timer and recorder. These results set the basis for using nanobodies against chromatin regulators for controlling gene expression and epigenetic memory.

Indexed as

AlgorithmsAnimalsChromatinEpigenesis, GeneticGene Expression RegulationGene SilencingGreen Fluorescent ProteinsHumansModels, GeneticPromoter Regions, GeneticSignal TransductionSingle-Domain AntibodiesChromatinGreen Fluorescent ProteinsSingle-Domain Antibodies

Identifiers

PMID33483487
PMCPMC7822885
OpenAlexW3124014132

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.