Evidence map›Paper›PMID 33482665›Full record

ArticlePloS one2021

Pyrimidone inhibitors targeting Chikungunya Virus nsP3 macrodomain by fragment-based drug design.

Sixue Zhang, Atefeh Garzan, Nicole Haese, Robert Bostwick, Yohanka Martinez-Gzegozewska, Lynn Rasmussen, Daniel N Streblow, Mark T Haise, Ashish K Pathak, Corinne E Augelli-Szafran and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 39 citations in OpenAlex.

  1. Pooled it
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  3. Review
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  6. Article
  7. Phenol and chromone compounds forPharmaceutical science advances · 2025
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  10. bioRxiv : the preprint server for biology · 2025
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  12. Structural Features of Nucleoproteins from the Recently DiscoveredInternational journal of molecular sciences · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Sixue ZhangDrug Discovery Division, Chemistry Department, Southern Research, Birmingham, Alabama, United States of America.
Atefeh GarzanDrug Discovery Division, Chemistry Department, Southern Research, Birmingham, Alabama, United States of America.
Nicole HaeseVaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, Oregon, United States of America.ORCID 0000-0003-4871-2763
Robert BostwickDrug Discovery Division, High-Throughput Screening Center, Southern Research, Birmingham, Alabama, United States of America.
Yohanka Martinez-GzegozewskaDrug Discovery Division, High-Throughput Screening Center, Southern Research, Birmingham, Alabama, United States of America.
Lynn RasmussenDrug Discovery Division, High-Throughput Screening Center, Southern Research, Birmingham, Alabama, United States of America.
Daniel N StreblowVaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, Oregon, United States of America.
Mark T HaiseDepartment of Genetics, University of North Carolina School of Medicine, Chapel Hill, North Carolina, United States of America.
Ashish K PathakDrug Discovery Division, Chemistry Department, Southern Research, Birmingham, Alabama, United States of America.
Corinne E Augelli-SzafranDrug Discovery Division, Chemistry Department, Southern Research, Birmingham, Alabama, United States of America.
Mousheng WuDrug Discovery Division, Chemistry Department, Southern Research, Birmingham, Alabama, United States of America.ORCID 0000-0001-7285-1363
Southern Research Institute · USOregon Health & Science University · USUniversity of North Carolina at Chapel Hill · US

Funding

Project 4 - Influenza - UABU19AI142759 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WHITLEY, RICHARD J. · 2019 to 2023
$37.5M
Screening CoreU19AI109680 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MADDRY, JOSEPH A · 2014 to 2018
$34.9M
NIAID NIH HHS U19 AI109680NIAID NIH HHS U19 AI142759
6 · The paper itself

Abstract

The macrodomain of nsP3 (nsP3MD) is highly conserved among the alphaviruses and ADP-ribosylhydrolase activity of Chikungunya Virus (CHIKV) nsP3MD is critical for CHIKV viral replication and virulence. No small molecule drugs targeting CHIKV nsP3 have been identified to date. Here we report small fragments that bind to nsP3MD which were discovered by virtually screening a fragment library and X-ray crystallography. These identified fragments share a similar scaffold, 2-pyrimidone-4-carboxylic acid, and are specifically bound to the ADP-ribose binding site of nsP3MD. Among the fragments, 2-oxo-5,6-benzopyrimidine-4-carboxylic acid showed anti-CHIKV activity with an IC50 of 23 μM. Our fragment-based drug discovery approach provides valuable information to further develop a specific and potent nsP3 inhibitor of CHIKV viral replication based on the 2-pyrimidone-4-carboxylic acid scaffold. In silico studies suggest this pyrimidone scaffold could also bind to the macrodomains of other alphaviruses and coronaviruses and thus, have potential pan-antiviral activity.

Indexed as

Binding SitesChikungunya virusDrug DesignFibroblastsHumansPyrimidinonesViral Nonstructural ProteinsVirus ReplicationPyrimidinonesViral Nonstructural Proteins

Identifiers

PMID33482665
PMCPMC7822648
OpenAlexW3123661737

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.