Evidence map›Paper›PMID 33481236›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Assessing In Situ Phosphoinositide-Protein Interactions Through Fluorescence Proximity Ligation Assay in Cultured Cells.

Mo Chen, Hudson T Horn, Tianmu Wen, Vincent L Cryns, Richard A Anderson

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Mo ChenUniversity of Wisconsin-Madison, School of Medicine and Public Health, Madison, WI, USA.
Hudson T HornUniversity of Wisconsin-Madison, School of Medicine and Public Health, Madison, WI, USA.
Tianmu WenUniversity of Wisconsin-Madison, School of Medicine and Public Health, Madison, WI, USA.
Vincent L CrynsDepartment of Medicine, University of Wisconsin Carbone Cancer Center, University of Wisconsin-Madison, School of Medicine and Public Health, Madison, WI, USA.
Richard A AndersonUniversity of Wisconsin-Madison, School of Medicine and Public Health, Madison, WI, USA. raanders@wisc.edu.
University of Wisconsin–Madison · USUniversity of Wisconsin Carbone Cancer Center · US

Funding

Phosphoinositide Signaling in the Cytosol and NucleusR35GM134955 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Richard A. Anderson · 2020 to 2026
$5.0M
Tau-PI3Kalpha Complex in Regulation of PI3K/Akt-dependent Neuronal Function and SurvivalR21AG074605 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI ANDERSON, RICHARD A., THAPA, NARENDRA · 2022 to 2023
$424k
NIA NIH HHS R21 AG074605NIGMS NIH HHS R35 GM134955
6 · The paper itself

Abstract

Proximity ligation assay (PLA) is a well-established method for detecting in situ interactions between two epitopes with high resolution and specificity. Notably, PLA is not only a robust method for studying protein-protein interaction but also an efficient approach to characterize and validate protein posttranslational modifications (PTM) using one antibody against the core protein and one against the PTM residue. Therefore, it could be applied as a powerful approach to detect specific interactions of endogenous phosphoinositides and their binding proteins within cells. Importantly, we have specifically detected the PLA signal between PtdIns(4,5)P

Indexed as

AnimalsAntibodiesCell LineCells, CulturedFluorescenceHumansPhosphatidylinositol PhosphatesPhosphatidylinositolsProtein BindingProtein Interaction Domains and MotifsProtein Interaction MappingProtein Processing, Post-TranslationalProteinsProtein TransportAntibodiesPhosphatidylinositol PhosphatesPhosphatidylinositolsProteinsNuclear localizationp53Phosphoinositide–protein interactionPosttranslational modificationProximity ligation assayPtdIns(4,5)P2

Identifiers

PMID33481236
PMCPMC9789737
OpenAlexW3123688423

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.