Evidence map›Paper›PMID 33481165›Full record

ArticleScience China. Life sciences2021

Genome-wide signatures of mammalian skin covering evolution.

Peng Cao, Qinlong Dai, Cao Deng, Xiang Zhao, Shishan Qin, Jian Yang, Ran Ju, Zhiwen Wang, Guoqing Lu, Xiaodong Gu and 2 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Science China. Life sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Peng Cao *Key Laboratory of Drug Targets and Drug Leads for Degenerative Diseases, Affiliated Hospital of Integrated Traditional Chinese and Western Medicine, Nanjing University of Chinese Medicine, Nanjing, 210023, China. pcao79@yahoo.com.
Qinlong Dai *Shimian Research Center of Giant Panda Small Population Conservation and Rejuvenation, Shimian, 625400, China.
Cao Deng *DNA Stories Bioinformatics Center, Chengdu, 610021, China.
Xiang Zhao *PubBio-Tech Services Corporation, Wuhan, 430070, China.
Shishan QinDNA Stories Bioinformatics Center, Chengdu, 610021, China.
Jian YangDNA Stories Bioinformatics Center, Chengdu, 610021, China.
Ran JuNanjing Foreign Language School Xianlin Branch, Nanjing, 210023, China.
Zhiwen WangPubBio-Tech Services Corporation, Wuhan, 430070, China.
Guoqing LuUniversity of Nebraska at Omaha, Omaha, 68181, USA.
Xiaodong GuSichuan Station of Wildlife survey and Management, Chengdu, 610082, China.
Zhisong YangKey Laboratory of Southwest China Wildlife Resources Conservation (Ministry of Education), China West Normal University, Nanchong, 637002, China.
Lifeng ZhuCollege of Life Sciences, Nanjing Normal University, Nanjing, 210046, China. zhulf2020@126.com.
Novogene Bioinformatics Institute · CNUniversity of Nebraska at Omaha · USChina West Normal University · CNFanjingshan National Nature Reserve · CNNanjing Foreign Language School · CNNanjing University of Chinese Medicine · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Animal body coverings provide protection and allow for adaptation to environmental pressures such as heat, ultraviolet radiation, water loss, and mechanical forces. Here, using a comparative genomics analysis of 39 mammal species spanning three skin covering types (hairless, scaly and spiny), we found some genes (e.g., UVRAG, POLH, and XPC) involved in skin inflammation, skin innate immunity, and ultraviolet radiation damage repair were under selection in hairless ocean mammals (e.g., whales and manatees). These signatures might be associated with a high risk of skin diseases from pathogens and ultraviolet radiation. Moreover, the genomes from three spiny mammal species shared convergent genomic regions (EPHB2, EPHA4, and NIN) and unique positively selected genes (FZD6, INVS, and CDC42) involved in skin cell polarity, which might be related to the development of spines. In scaly mammals, the shared convergent genomic regions (e.g., FREM2) were associated with the integrity of the skin epithelium and epidermal adhesion. This study identifies potential convergent genomic features among distantly related mammals with the same skin covering type.

Indexed as

Adaptation, PhysiologicalAmino Acid SubstitutionAnimalsEvolution, MolecularGenomeGenomicsHair FollicleIntegumentary SystemMammalsPhylogenySelection, Geneticcomparative genomicsconvergent evolutionhairless mammalsscaly mammalsskin coveringsspiny mammals

Identifiers

PMID33481165
OpenAlexW3124884150

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.