Evidence map›Paper›PMID 33479240›Full record

ArticleNature communications2021

SVIP is a molecular determinant of lysosomal dynamic stability, neurodegeneration and lifespan.

Alyssa E Johnson, Brian O Orr, Richard D Fetter, Armen J Moughamian, Logan A Primeaux, Ethan G Geier, Jennifer S Yokoyama, Bruce L Miller, Graeme W Davis

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
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  14. HumanmicroPublication biology · 2024
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  20. Frontiers in cell and developmental biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Alyssa E JohnsonDepartment of Biochemistry and Biophysics, Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA, 94158, USA.
Brian O OrrDepartment of Biochemistry and Biophysics, Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA, 94158, USA.
Richard D FetterDepartment of Biochemistry and Biophysics, Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA, 94158, USA.ORCID 0000-0002-1558-100X
Armen J MoughamianDepartment of Biochemistry and Biophysics, Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA, 94158, USA.
Logan A PrimeauxDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA.
Ethan G GeierDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA.
Jennifer S YokoyamaDepartment of Neurology, Memory and Aging Center, University of California, San Francisco, San Francisco, CA, 94158, USA.
Bruce L MillerDepartment of Neurology, Memory and Aging Center, University of California, San Francisco, San Francisco, CA, 94158, USA.
Graeme W DavisDepartment of Biochemistry and Biophysics, Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA, 94158, USA. Graeme.davis@ucsf.edu.ORCID 0000-0003-1355-8401
University of California, San Francisco · USLouisiana State University · US

Funding

TDP-43 Loss-of-Function: Biology to BiomarkersP01AG019724 · NIA · UNIVERSITY OF PENNSYLVANIA · PI Jennifer Merrilees · 2002 to 2026
$67.2M
Research Education ComponentP30AG062422 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Serggio Carlo Lanata · 2019 to 2026
$36.9M
PrPSc SPECIFIC INTERACTION WITH NOVEL PrP-Fc FUSION PROTEINSP50AG023501 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MILLER, BRUCE L · 2004 to 2018
$27.1M
Homeostatic Stabilization of Neural Function in Health and DiseaseR35NS097212 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DAVIS, GRAEME W · 2017 to 2024
$9.2M
Elucidating clinical heterogeneity in early-onset AD via genomics, transcriptomics, and neuroimagingR01AG062588 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI YOKOYAMA, JENNIFER S · 2019 to 2023
$4.0M
Tubular lysosomes in health and diseaseR35GM138116 · NIGMS · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI Alyssa Johnson · 2020 to 2026
$2.4M
Molecular basis of VCP-linked degenerationR00NS100988 · NINDS · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI JOHNSON, ALYSSA · 2018 to 2020
$747k
RNA signatures of frontotemporal dementia and ALS due to C9ORF72 expansionK01AG049152 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI YOKOYAMA, JENNIFER S · 2015 to 2019
$648k
Molecular basis of VCP-linked degenerationK99NS100988 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSON, ALYSSA · 2017 to 2017
$88k
NIA NIH HHS K01 AG049152NIA NIH HHS P01 AG019724NIA NIH HHS P30 AG062422NIA NIH HHS P50 AG023501NIA NIH HHS R01 AG062588NIGMS NIH HHS R35 GM138116NINDS NIH HHS K99 NS100988NINDS NIH HHS R00 NS100988NINDS NIH HHS R35 NS097212
6 · The paper itself

Abstract

Missense mutations in Valosin-Containing Protein (VCP) are linked to diverse degenerative diseases including IBMPFD, amyotrophic lateral sclerosis (ALS), muscular dystrophy and Parkinson's disease. Here, we characterize a VCP-binding co-factor (SVIP) that specifically recruits VCP to lysosomes. SVIP is essential for lysosomal dynamic stability and autophagosomal-lysosomal fusion. SVIP mutations cause muscle wasting and neuromuscular degeneration while muscle-specific SVIP over-expression increases lysosomal abundance and is sufficient to extend lifespan in a context, stress-dependent manner. We also establish multiple links between SVIP and VCP-dependent disease in our Drosophila model system. A biochemical screen identifies a disease-causing VCP mutation that prevents SVIP binding. Conversely, over-expression of an SVIP mutation that prevents VCP binding is deleterious. Finally, we identify a human SVIP mutation and confirm the pathogenicity of this mutation in our Drosophila model. We propose a model for VCP disease based on the differential, co-factor-dependent recruitment of VCP to intracellular organelles.

Indexed as

MutationAmyotrophic Lateral SclerosisAnimalsAnimals, Genetically ModifiedDisease Models, AnimalDrosophila melanogasterDrosophila ProteinsFrontotemporal DementiaHumansLongevityLysosomesMembrane ProteinsMuscular Dystrophies, Limb-GirdleMyositis, Inclusion BodyNeurodegenerative DiseasesOsteitis DeformansDrosophila ProteinsMembrane ProteinsPhosphate-Binding ProteinsSVIP protein, humanValosin Containing Protein

Identifiers

PMID33479240
PMCPMC7820495
OpenAlexW3125476893

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.