Evidence map›Paper›PMID 33479198›Full record

ArticleNature communications2021

The SARS-CoV-2 nucleocapsid phosphoprotein forms mutually exclusive condensates with RNA and the membrane-associated M protein.

Shan Lu, Qiaozhen Ye, Digvijay Singh, Yong Cao, Jolene K Diedrich, John R Yates, Elizabeth Villa, Don W Cleveland, Kevin D Corbett

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 300 papers.

0numbers the graph read from it
0cells of the map it votes in
300citing papers in PubMed
32.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

300 citing papers in PubMed, 449 citations in OpenAlex.

  1. Article
  2. Review
  3. Deltacoronavirus Modulates circRNA cGLIS3 Metabolism to Evade Host Antiviral Response.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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240 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Shan Lu *Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0003-4740-0610
Qiaozhen Ye *Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.
Digvijay SinghSection of Molecular Biology, Division of Biological Sciences, University of California San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0002-7411-4436
Yong CaoNational Institute of Biological Sciences, 102206, Beijing, China.ORCID 0000-0002-5545-1111
Jolene K DiedrichThe Scripps Research Institute, La Jolla, CA, 92037, USA.
John R YatesThe Scripps Research Institute, La Jolla, CA, 92037, USA.ORCID 0000-0001-5267-1672
Elizabeth VillaSection of Molecular Biology, Division of Biological Sciences, University of California San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0003-4677-9809
Don W ClevelandDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, 92093, USA. dcleveland@health.ucsd.edu.
Kevin D CorbettDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, 92093, USA. kcorbett@health.ucsd.edu.ORCID 0000-0001-5854-2388
University of California San Diego · USScripps Research Institute · USLudwig Cancer Research · BENational Institute of Biological Sciences, Beijing · CN

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI YATES III, JOHN R · 2012 to 2021
$20.7M
NEURONAL FILAMENT SYNTHESIS, ASSEMBLY, AND FUNCTIONR01NS027036 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Bogdan Bintu, Don W Cleveland · 1989 to 2026
$11.8M
U of Calif, San Diego Neuroscience Microscopy ImagingP30NS047101 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G, ZHENG, BINHAI · 2003 to 2022
$9.0M
Opening Windows into the Cell: Revealing the Molecular Architecture of the Nuclear PeripheryDP2GM123494 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VILLA, ELIZABETH · 2016 to 2019
$2.5M
Expanding the CRISPR/Cas toolbox for RNA modulationR01GM128464 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CORBETT, KEVIN DANIEL · 2018 to 2021
$863k
Orbitrap Fusion Mass SpectrometerS10OD023498 · OD · LUDWIG INSTITUTE FOR CANCER RES LTD · PI ZHOU, HUILIN · 2017 to 2017
$600k
NIGMS NIH HHS DP2 GM123494NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM128464NIH HHS S10 OD023498NINDS NIH HHS P30 NS047101NINDS NIH HHS R01 NS027036
6 · The paper itself

Abstract

The multifunctional nucleocapsid (N) protein in SARS-CoV-2 binds the ~30 kb viral RNA genome to aid its packaging into the 80-90 nm membrane-enveloped virion. The N protein is composed of N-terminal RNA-binding and C-terminal dimerization domains that are flanked by three intrinsically disordered regions. Here we demonstrate that the N protein's central disordered domain drives phase separation with RNA, and that phosphorylation of an adjacent serine/arginine rich region modulates the physical properties of the resulting condensates. In cells, N forms condensates that recruit the stress granule protein G3BP1, highlighting a potential role for N in G3BP1 sequestration and stress granule inhibition. The SARS-CoV-2 membrane (M) protein independently induces N protein phase separation, and three-component mixtures of N + M + RNA form condensates with mutually exclusive compartments containing N + M or N + RNA, including annular structures in which the M protein coats the outside of an N + RNA condensate. These findings support a model in which phase separation of the SARS-CoV-2 N protein contributes both to suppression of the G3BP1-dependent host immune response and to packaging genomic RNA during virion assembly.

Indexed as

Cell MembraneCoronavirus M ProteinsCoronavirus Nucleocapsid ProteinsCOVID-19DNA HelicasesHumansPhosphoproteinsPoly-ADP-Ribose Binding ProteinsProtein BindingProtein DomainsRNA HelicasesRNA Recognition Motif ProteinsRNA, ViralSARS-CoV-2Viral Matrix ProteinsCoronavirus M ProteinsCoronavirus Nucleocapsid ProteinsDNA HelicasesG3BP1 protein, humanmembrane protein, SARS-CoV-2nucleocapsid phosphoprotein, SARS-CoV-2PhosphoproteinsPoly-ADP-Ribose Binding ProteinsRNA HelicasesRNA Recognition Motif ProteinsRNA, ViralViral Matrix Proteins

Identifiers

PMID33479198
PMCPMC7820290
OpenAlexW3125800928

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.