Evidence map›Paper›PMID 33479180›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

A genome-scale CRISPR screen reveals factors regulating Wnt-dependent renewal of mouse gastric epithelial cells.

Kazuhiro Murakami, Yumi Terakado, Kikue Saito, Yoshie Jomen, Haruna Takeda, Masanobu Oshima, Nick Barker

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 61 citations in OpenAlex.

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  20. Adding a Chemical Biology Twist to CRISPR Screening.Israel journal of chemistry · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Kazuhiro MurakamiDivision of Epithelial Stem Cell Biology, Cancer Research Institute, Kanazawa University, Kakuma-machi, 924-1192 Kanazawa, Japan; kmurakami@staff.kanazawa-u.ac.jp Nicholas_barker@imcb.a-star.edu.sg.ORCID https://orcid.org/0000-0003-1759-9542
Yumi TerakadoDivision of Epithelial Stem Cell Biology, Cancer Research Institute, Kanazawa University, Kakuma-machi, 924-1192 Kanazawa, Japan.ORCID https://orcid.org/0000-0001-9095-848X
Kikue SaitoDivision of Epithelial Stem Cell Biology, Cancer Research Institute, Kanazawa University, Kakuma-machi, 924-1192 Kanazawa, Japan.ORCID https://orcid.org/0000-0002-4192-7780
Yoshie JomenDivision of Epithelial Stem Cell Biology, Cancer Research Institute, Kanazawa University, Kakuma-machi, 924-1192 Kanazawa, Japan.ORCID https://orcid.org/0000-0002-9031-4366
Haruna TakedaLaboratory of Molecular Genetics, National Cancer Center Research Institute, Chuo-ku, 104-0045 Tokyo, Japan.ORCID https://orcid.org/0000-0002-1643-2524
Masanobu OshimaDivision of Genetics, Cancer Research Institute, Nano-Life Science Institute, Kanazawa University, Kakuma-machi, 920-1192 Kanazawa, Japan.ORCID https://orcid.org/0000-0002-3304-0004
Nick BarkerDivision of Epithelial Stem Cell Biology, Cancer Research Institute, Kanazawa University, Kakuma-machi, 924-1192 Kanazawa, Japan; kmurakami@staff.kanazawa-u.ac.jp Nicholas_barker@imcb.a-star.edu.sg.ORCID https://orcid.org/0000-0003-3566-4475
Kanazawa University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An ability to safely harness the powerful regenerative potential of adult stem cells for clinical applications is critically dependent on a comprehensive understanding of the underlying mechanisms regulating their activity. Epithelial organoid cultures accurately recapitulate many features of in vivo stem cell-driven epithelial renewal, providing an excellent ex vivo platform for interrogation of key regulatory mechanisms. Here, we employed a genome-scale clustered, regularly interspaced, short palindromic repeats (CRISPR) knockout (KO) screening assay using mouse gastric epithelial organoids to identify modulators of Wnt-driven stem cell-dependent epithelial renewal in the gastric mucosa. In addition to known Wnt pathway regulators, such as

Indexed as

Adenomatous Polyposis Coli ProteinAdult Stem CellsAnaplastic Lymphoma KinaseAnimalsCell ProliferationCRISPR-Cas SystemsEpithelial CellsGastric MucosaGene EditingGene Expression RegulationGene LibraryGlycogen Synthase Kinase 3 betaHEK293 CellsHumansInterleukinsMiceAdenomatous Polyposis Coli Proteinadenomatous polyposis coli protein, mouseAlk protein, mouseAnaplastic Lymphoma KinaseGlycogen Synthase Kinase 3 betaInterleukinsLgr5 protein, mousePrkra protein, mouseReceptors, G-Protein-CoupledRNA-Binding ProteinsCRISPR-Cas9genome-wide screeningLgr5tissue stem cellsWnt

Identifiers

PMID33479180
PMCPMC7848749
OpenAlexW3124533528

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.