Evidence map›Paper›PMID 33479166›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Dynamic competition between SARS-CoV-2 NSP1 and mRNA on the human ribosome inhibits translation initiation.

Christopher P Lapointe, Rosslyn Grosely, Alex G Johnson, Jinfan Wang, Israel S Fernández, Joseph D Puglisi

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed
13.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 190 citations in OpenAlex.

  1. Article
  2. Remodeling of mRNA by eIF4F in human translation initiation.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. SARS-CoV-2 and MERS-CoV disrupt host protein synthesis via nsp1 with differential effects on the integrated stress response.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
  7. eIF1 and eIF5 dynamically control translation start site fidelity.Nature structural & molecular biology · 2025
    Article
  8. Article
  9. Article
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  11. Article
  12. Article
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  14. Article
  15. Review
  16. Review
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  18. Review
  19. Article
  20. Review

63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Christopher P LapointeDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305.ORCID 0000-0002-0406-105X
Rosslyn GroselyDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305.
Alex G JohnsonDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305.ORCID 0000-0002-4040-9797
Jinfan WangDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305.ORCID 0000-0003-4170-9289
Israel S FernándezDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York City, NY 10032.ORCID 0000-0001-7218-1603
Joseph D PuglisiDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305; puglisi@stanford.edu.
Stanford University · USColumbia University · US

Funding

Structure and Function of the Hepatitis C Virus GenomeR37AI047365 · NIAID · STANFORD UNIVERSITY · PI SARNOW, PETER · 2011 to 2019
$4.0M
THE PROKARYOTIC-LIKE IRES IN HCV AS A DRUG TARGETR01AI047365 · NIAID · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D, SARNOW, PETER · 1999 to 2010
$3.8M
Dynamics of eukaryotic translation initiation and its controlR01GM113078 · NIGMS · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D · 2016 to 2021
$2.9M
Defining modifiers and mechanisms of RAN translationRF1AG064690 · NIA · STANFORD UNIVERSITY · PI GITLER, AARON D., PUGLISI, JOSEPH D · 2019 to 2019
$2.8M
NIAID NIH HHS R01 AI047365NIAID NIH HHS R37 AI047365NIA NIH HHS RF1 AG064690NIGMS NIH HHS R01 GM113078NIH HHS AG064690NIH HHS AI047365NIH HHS GM011378
6 · The paper itself

Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a beta-CoV that recently emerged as a human pathogen and is the causative agent of the COVID-19 pandemic. A molecular framework of how the virus manipulates host cellular machinery to facilitate infection remains unclear. Here, we focus on SARS-CoV-2 NSP1, which is proposed to be a virulence factor that inhibits protein synthesis by directly binding the human ribosome. We demonstrate biochemically that NSP1 inhibits translation of model human and SARS-CoV-2 messenger RNAs (mRNAs). NSP1 specifically binds to the small (40S) ribosomal subunit, which is required for translation inhibition. Using single-molecule fluorescence assays to monitor NSP1-40S subunit binding in real time, we determine that eukaryotic translation initiation factors (eIFs) allosterically modulate the interaction of NSP1 with ribosomal preinitiation complexes in the absence of mRNA. We further elucidate that NSP1 competes with RNA segments downstream of the start codon to bind the 40S subunit and that the protein is unable to associate rapidly with 80S ribosomes assembled on an mRNA. Collectively, our findings support a model where NSP1 proteins from viruses in at least two subgenera of beta-CoVs associate with the open head conformation of the 40S subunit to inhibit an early step of translation, by preventing accommodation of mRNA within the entry channel.

Indexed as

COVID-19Eukaryotic Initiation FactorsHumansPandemicsPeptide Chain Initiation, TranslationalProtein BiosynthesisProtein Processing, Post-TranslationalRibosomal ProteinsRibosomesRibosome Subunits, Small, EukaryoticRNA, MessengerRNA, ViralSARS-CoV-2Viral Nonstructural ProteinsEukaryotic Initiation FactorsORF1ab polyprotein, SARS-CoV-2Ribosomal Proteinsribosomal protein S20RNA, MessengerRNA, ViralViral Nonstructural Proteinseukaryotic translation initiationhuman ribosomeNSP1SARS-CoV-2single-molecule fluorescence

Identifiers

PMID33479166
PMCPMC8017934
OpenAlexW3126082010

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.