Evidence map›Paper›PMID 33478949›Full record

ArticleScience immunology2021

Severely ill COVID-19 patients display impaired exhaustion features in SARS-CoV-2-reactive CD8

Anthony Kusnadi, Ciro Ramírez-Suástegui, Vicente Fajardo, Serena J Chee, Benjamin J Meckiff, Hayley Simon, Emanuela Pelosi, Grégory Seumois, Ferhat Ay, Pandurangan Vijayanand and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Science immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 166 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
166citing papers in PubMed, 1 pooled it
23.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

166 citing papers in PubMed, 1 synthesis or guideline pooled it, 248 citations in OpenAlex.

  1. Resolving SARS-CoV-2 CD4Cell reports. Medicine · 2022
    Pooled it
  2. Trial
  3. Trial
  4. Trial
  5. Trial
  6. Article
  7. Article
  8. Distinct CD8iScience · 2026
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. A Large-Scale Single-Cell Atlas Reveals the Peripheral Immune Panorama of Bacterial Pneumonia.American journal of respiratory and critical care medicine · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

106 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Anthony Kusnadi *La Jolla Institute for Immunology, La Jolla, CA 92037.ORCID 0000-0002-6172-389X
Ciro Ramírez-Suástegui *La Jolla Institute for Immunology, La Jolla, CA 92037.ORCID 0000-0001-8126-710X
Vicente Fajardo *La Jolla Institute for Immunology, La Jolla, CA 92037.ORCID 0000-0002-1578-7438
Serena J Chee *NIHR and CRUK Southampton Experimental Cancer Medicine Center, Faculty of Medicine, University of Southampton, Southampton, UK.ORCID 0000-0001-7244-9876
Benjamin J MeckiffLa Jolla Institute for Immunology, La Jolla, CA 92037.ORCID 0000-0002-6930-5545
Hayley SimonLa Jolla Institute for Immunology, La Jolla, CA 92037.
Emanuela PelosiSouthampton Specialist Virology Centre, Department of Infection, University Hospital Southampton NHS Foundation Trust, Southampton, UK.
Grégory SeumoisLa Jolla Institute for Immunology, La Jolla, CA 92037.ORCID 0000-0002-8164-6852
Ferhat AyLa Jolla Institute for Immunology, La Jolla, CA 92037.ORCID 0000-0002-0708-6914
Pandurangan VijayanandLa Jolla Institute for Immunology, La Jolla, CA 92037. vijay@lji.org cottensmeier@lji.org.ORCID 0000-0001-7067-9723
Christian H OttensmeierLa Jolla Institute for Immunology, La Jolla, CA 92037. vijay@lji.org cottensmeier@lji.org.ORCID 0000-0003-3619-1657
La Jolla Institute for Immunology · USNIHR CRUK Experimental Cancer Medicine Centre · GBUniversity Hospital Southampton NHS Foundation Trust · GB

Funding

Single-cell atlas of lung tissue-resident memory T cells reactive to upper and lower respiratory tract pathogensU19AI118626 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Alessandro Sette · 2015 to 2026
$36.7M
T follicular helper (Tfh) CD4+ T cell, germinal center, and antibody response dysfunction in human recurrent tonsillitisU19AI142742 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Shane P Crotty · 2019 to 2026
$32.8M
Epigenomics of T cells and innate immune cells in human asthmaR01HL114093 · NHLBI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI ARSHAD, SYED HASAN, PETERS, BJOERN · 2011 to 2020
$8.5M
Studying the function of human genetic variation in the light of 3D genome organizationR35GM128938 · NIGMS · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Ferhat Ay · 2018 to 2026
$4.6M
SARS-CoV-2-reactive tissue-resident memory T cells in healthy and cancer subjectsU01CA260588 · NCI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI AY, FERHAT, OTTENSMEIER, CHRISTIAN HERMANN HEINRICH · 2020 to 2024
$3.6M
NovaSeq5000 High Throughput SequencerS10OD025052 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SEUMOIS, GREGORY · 2018 to 2018
$832k
FACSAria II Cell SorterS10RR027366 · NCRR · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CROFT, MICHAEL · 2011 to 2011
$514k
NCI NIH HHS U01 CA260588NHLBI NIH HHS R01 HL114093NIAID NIH HHS U19 AI118626NIAID NIH HHS U19 AI142742NIGMS NIH HHS R35 GM128938
6 · The paper itself

Abstract

The molecular properties of CD8

Indexed as

AdultAgedAged, 80 and overCD8-Positive T-LymphocytesCOVID-19FemaleGlycolysisHumansImmunologic MemoryMaleMiddle AgedNF-kappa BSARS-CoV-2Signal TransductionSingle-Cell AnalysisYoung AdultNF-kappa B

Identifiers

PMID33478949
PMCPMC8101257
OpenAlexW3123130740

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.