Evidence map›Paper›PMID 33478381›Full record

ArticleBMC plant biology2021

Expression of a bacterial 3-dehydroshikimate dehydratase (QsuB) reduces lignin and improves biomass saccharification efficiency in switchgrass (Panicum virgatum L.).

Zhangying Hao, Sasha Yogiswara, Tong Wei, Veronica Teixeira Benites, Anagh Sinha, George Wang, Edward E K Baidoo, Pamela C Ronald, Henrik V Scheller, Dominique Loqué and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  3. Engineered reduction of S-adenosylmethionine alters lignin in sorghum.Biotechnology for biofuels and bioproducts · 2024
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  10. Engineering sorghum for higher 4-hydroxybenzoic acid content.Metabolic engineering communications · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Zhangying HaoJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Sasha YogiswaraJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Tong WeiJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Veronica Teixeira BenitesJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Anagh SinhaJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
George WangJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Edward E K BaidooJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Pamela C RonaldJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Henrik V SchellerJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Dominique LoquéJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Aymerick EudesJoint BioEnergy Institute, Emeryville, CA, 94608, USA. ageudes@lbl.gov.ORCID http://orcid.org/0000-0002-1387-6111
Lawrence Berkeley National Laboratory · USBGI Group (China) · CN

Funding

Office of Science DE-AC02-05CH11231
6 · The paper itself

Abstract

backgroundLignin deposited in plant cell walls negatively affects biomass conversion into advanced bioproducts. There is therefore a strong interest in developing bioenergy crops with reduced lignin content or altered lignin structures. Another desired trait for bioenergy crops is the ability to accumulate novel bioproducts, which would enhance the development of economically sustainable biorefineries. As previously demonstrated in the model plant Arabidopsis, expression of a 3-dehydroshikimate dehydratase in plants offers the potential for decreasing lignin content and overproducing a value-added metabolic coproduct (i.e., protocatechuate) suitable for biological upgrading.

resultsThe 3-dehydroshikimate dehydratase QsuB from Corynebacterium glutamicum was expressed in the bioenergy crop switchgrass (Panicum virgatum L.) using the stem-specific promoter of an O-methyltransferase gene (pShOMT) from sugarcane. The activity of pShOMT was validated in switchgrass after observation in-situ of beta-glucuronidase (GUS) activity in stem nodes of plants carrying a pShOMT::GUS fusion construct. Under controlled growth conditions, engineered switchgrass lines containing a pShOMT::QsuB construct showed reductions of lignin content, improvements of biomass saccharification efficiency, and accumulated higher amount of protocatechuate compared to control plants. Attempts to generate transgenic switchgrass lines carrying the QsuB gene under the control of the constitutive promoter pZmUbi-1 were unsuccessful, suggesting possible toxicity issues associated with ectopic QsuB expression during the plant regeneration process.

conclusionThis study validates the transfer of the QsuB engineering approach from a model plant to switchgrass. We have demonstrated altered expression of two important traits: lignin content and accumulation of a co-product. We found that the choice of promoter to drive QsuB expression should be carefully considered when deploying this strategy to other bioenergy crops. Field-testing of engineered QsuB switchgrass are in progress to assess the performance of the introduced traits and agronomic performances of the transgenic plants.

Indexed as

Bacterial ProteinsBiomassCell WallCorynebacteriumGene Expression Regulation, PlantGenes, ReporterHydro-LyasesLigninMethyltransferasesOrgan SpecificityPanicumPlant ProteinsPlants, Genetically ModifiedPlant StemsPromoter Regions, GeneticSaccharum3-dehydroshikimate dehydrataseBacterial ProteinsHydro-LyasesLigninMethyltransferasesPlant ProteinsBioenergyLigninProtocatechuateSaccharificationShikimateSwitchgrass

Identifiers

PMID33478381
PMCPMC7819203
OpenAlexW3124665587

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.