Evidence map›Paper›PMID 33478118›Full record

ReviewGenes2021

Bridging the Gap between Vertebrate Cytogenetics and Genomics with Single-Chromosome Sequencing (ChromSeq).

Alessio Iannucci, Alexey I Makunin, Artem P Lisachov, Claudio Ciofi, Roscoe Stanyon, Marta Svartman, Vladimir A Trifonov

Abstract readReview
In one paragraph

Review in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Cytogenetic Analysis of the Bimodal Karyotype of the Common European Adder,Animals : an open access journal from MDPI · 2022
    Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alessio IannucciDepartment of Biology, University of Florence, 50019 Sesto Fiorentino, Italy.ORCID 0000-0001-7729-4412
Alexey I MakuninWellcome Sanger Institute, Hinxton CB10 1SA, UK.ORCID 0000-0002-9555-5097
Artem P LisachovInstitute of Environmental and Agricultural Biology (X-BIO), University of Tyumen, 625003 Tyumen, Russia.
Claudio CiofiDepartment of Biology, University of Florence, 50019 Sesto Fiorentino, Italy.ORCID 0000-0001-8537-8659
Roscoe StanyonDepartment of Biology, University of Florence, 50019 Sesto Fiorentino, Italy.
Marta SvartmanDepartamento de Genética, Ecologia e Evolução, Universidade Federal de Minas Gerais, Belo Horizonte 31270-901, Brazil.
Vladimir A TrifonovInstitute of Molecular and Cellular Biology SB RAS, 630090 Novosibirsk, Russia.ORCID 0000-0003-0454-8359

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study of vertebrate genome evolution is currently facing a revolution, brought about by next generation sequencing technologies that allow researchers to produce nearly complete and error-free genome assemblies. Novel approaches however do not always provide a direct link with information on vertebrate genome evolution gained from cytogenetic approaches. It is useful to preserve and link cytogenetic data with novel genomic discoveries. Sequencing of DNA from single isolated chromosomes (ChromSeq) is an elegant approach to determine the chromosome content and assign genome assemblies to chromosomes, thus bridging the gap between cytogenetics and genomics. The aim of this paper is to describe how ChromSeq can support the study of vertebrate genome evolution and how it can help link cytogenetic and genomic data. We show key examples of ChromSeq application in the refinement of vertebrate genome assemblies and in the study of vertebrate chromosome and karyotype evolution. We also provide a general overview of the approach and a concrete example of genome refinement using this method in the species

Indexed as

AnimalsChromosomesCytogenetic AnalysisGenomicsSequence Analysis, DNAVertebratesAnolischromosomicscytogenomicsde novo assemblyDOPseqflow sortingkaryotypemicrodissectionreference genomes

Identifiers

PMID33478118
PMCPMC7835784

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.