Evidence map›Paper›PMID 33477749›Full record

ArticleCancers2021

T-Cell Lymphoma Clonality by Copy Number Variation Analysis of T-Cell Receptor Genes.

Ming Liang Oon, Jing Quan Lim, Bernett Lee, Sai Mun Leong, Gwyneth Shook-Ting Soon, Zi Wei Wong, Evelyn Huizi Lim, Zhenhua Li, Allen Eng Juh Yeoh, Shangying Chen and 17 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Epstein-Barr Virus-Associated T/NK-Cell Neoplasms.Journal of medical virology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 13 institutions in 7 countries.

Ming Liang OonDepartment of Pathology, National University Hospital, National University Health System, Singapore 119074, Singapore.ORCID 0000-0003-0493-3361
Jing Quan LimLymphoma Genomic Translational Research Laboratory, Division of Cellular and Molecular Research, National Cancer Centre Singapore, Singapore 169610, Singapore.
Bernett LeeSingapore Immunology Network (SIgN), A*STAR (Agency for Science, Technology and Research), Singapore 138632, Singapore.
Sai Mun LeongDepartment of Pathology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 119074, Singapore.
Gwyneth Shook-Ting SoonDepartment of Pathology, National University Hospital, National University Health System, Singapore 119074, Singapore.
Zi Wei WongDepartment of Pathology, National University Hospital, National University Health System, Singapore 119074, Singapore.
Evelyn Huizi LimViva-NUS Centre for Translational Research in Acute Leukaemia, Department of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117597, Singapore.
Zhenhua LiViva-NUS Centre for Translational Research in Acute Leukaemia, Department of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117597, Singapore.
Allen Eng Juh YeohViva-NUS Centre for Translational Research in Acute Leukaemia, Department of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117597, Singapore.
Shangying ChenDepartment of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117596, Singapore.
Kenneth Hon Kim BanDepartment of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117596, Singapore.
Tae-Hoon ChungCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore.
Soo-Yong TanDepartment of Pathology, National University Hospital, National University Health System, Singapore 119074, Singapore.
Shih-Sung ChuangDepartment of Pathology, Chi-Mei Medical Center, Tainan 71004, Taiwan.ORCID 0000-0003-3971-525X
Seiichi KatoDepartment of Pathology and Laboratory Medicine, Nagoya University Hospital, Nagoya 466-8560, Japan.ORCID 0000-0001-9713-3691
Shigeo NakamuraDepartment of Pathology and Laboratory Medicine, Nagoya University Hospital, Nagoya 466-8560, Japan.
Emiko TakahashiDepartment of Pathology, Aichi Medical University Hospital, Nagakute 480-1195, Japan.ORCID 0000-0001-8284-567X
Yong-Howe HoDepartment of Pathology, Tan Tock Seng Hospital, Singapore 308433, Singapore.
Joseph D KhouryDepartment of Hematopathology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.ORCID 0000-0003-2621-3584
Rex K H Au-YeungDepartment of Pathology, Queen Mary Hospital, The University of Hong Kong, Hong Kong, China.
Chee-Leong ChengDepartment of Pathology, Singapore General Hospital, Singapore 169608, Singapore.
Soon-Thye LimLymphoma Genomic Translational Research Laboratory, Division of Medical Oncology, National Cancer Centre Singapore, Singapore 169610, Singapore.
Wee-Joo ChngCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore.
Claudio TripodoTumor Immunology Unit, University of Palermo School of Medicine, 90134 Palermo, Italy.
Olaf RotzschkeSingapore Immunology Network (SIgN), A*STAR (Agency for Science, Technology and Research), Singapore 138632, Singapore.
Choon Kiat OngLymphoma Genomic Translational Research Laboratory, Division of Cellular and Molecular Research, National Cancer Centre Singapore, Singapore 169610, Singapore.
Siok-Bian NgDepartment of Pathology, National University Hospital, National University Health System, Singapore 119074, Singapore.ORCID 0000-0001-6051-6410
National University of Singapore · SGAgency for Science, Technology and Research · SGNational University Hospital · SGNagoya University Hospital · JPAichi Medical University Hospital · JPChi Mei Medical Center · TWDuke-NUS Medical School · SGNational Cancer Centre Singapore · SGQueen Mary Hospital · CNSingapore General Hospital · SGTan Tock Seng Hospital · SGThe University of Texas MD Anderson Cancer Center · USUniversity of Palermo · IT

Funding

National Medical Research Council CSAINV17nov016, WBS R-179-000-063-213National Medical Research Council NMRC-OFIRG16NOV090National Medical Research Council SYMPHONY)(NMRC May 2018 / OF-LCG
6 · The paper itself

Abstract

T-cell lymphomas arise from a single neoplastic clone and exhibit identical patterns of deletions in T-cell receptor (TCR) genes. Whole genome sequencing (WGS) data represent a treasure trove of information for the development of novel clinical applications. However, the use of WGS to identify clonal T-cell proliferations has not been systematically studied. In this study, based on WGS data, we identified monoclonal rearrangements (MRs) of T-cell receptors (TCR) genes using a novel segmentation algorithm and copy number computation. We evaluated the feasibility of this technique as a marker of T-cell clonality using T-cell lymphomas (TCL,

Indexed as

clonalitycopy number variation analysisT-cell lymphomaT-cell receptorwhole genome sequencing

Identifiers

PMID33477749
PMCPMC7832336
OpenAlexW3125589326

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.