Evidence map›Paper›PMID 33477542›Full record

ArticleGenes2021

Dissecting the Polygenic Basis of Cold Adaptation Using Genome-Wide Association of Traits and Environmental Data in Douglas-fir.

Amanda R De La Torre, Benjamin Wilhite, Daniela Puiu, John Bradley St Clair, Marc W Crepeau, Steven L Salzberg, Charles H Langley, Brian Allen, David B Neale

Open access · goldAbstract read
In one paragraph

Article in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

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  7. Needle and Branch Trait Variation Analysis and Associated SNP Loci Mining inInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Amanda R De La TorreSchool of Forestry, Northern Arizona University, 200 E. Pine Knoll, Flagstaff, AZ 86011, USA.ORCID 0000-0001-6647-723X
Benjamin WilhiteSchool of Forestry, Northern Arizona University, 200 E. Pine Knoll, Flagstaff, AZ 86011, USA.
Daniela PuiuCenter for Computational Biology, Department of Biomedical Engineering, Computer Science and Biostatistics, John Hopkins University, 3100 Wyman Park Dr, Wyman Park Building, Room S220, Baltimore, MD 21211, USA.
John Bradley St ClairUSDA Forest Service, Pacific Northwest Research Station, 3200 SW Jefferson Way, Corvallis, OR 97331, USA.
Marc W CrepeauDepartment of Evolution and Ecology, University of California-Davis, One Shields Avenue, Davis, CA 95616, USA.
Steven L SalzbergCenter for Computational Biology, Department of Biomedical Engineering, Computer Science and Biostatistics, John Hopkins University, 3100 Wyman Park Dr, Wyman Park Building, Room S220, Baltimore, MD 21211, USA.ORCID 0000-0002-8859-7432
Charles H LangleyDepartment of Evolution and Ecology, University of California-Davis, One Shields Avenue, Davis, CA 95616, USA.
Brian AllenDepartment of Plant Sciences, University of California-Davis, One Shields Avenue, Davis, CA 95616, USA.
David B NealeDepartment of Plant Sciences, University of California-Davis, One Shields Avenue, Davis, CA 95616, USA.
University of California, Davis · USJohns Hopkins University · USNorthern Arizona University · USPacific Northwest Research Station · US

Funding

Computational Methods for Genome Assembly, Transcript Assembly, and Variant DiscoveryR01HG006677 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI SALZBERG, STEVEN L. · 2011 to 2025
$10.7M
NHGRI NIH HHS R01 HG006677
6 · The paper itself

Abstract

Understanding the genomic and environmental basis of cold adaptation is key to understand how plants survive and adapt to different environmental conditions across their natural range. Univariate and multivariate genome-wide association (GWAS) and genotype-environment association (GEA) analyses were used to test associations among genome-wide SNPs obtained from whole-genome resequencing, measures of growth, phenology, emergence, cold hardiness, and range-wide environmental variation in coastal Douglas-fir (

Indexed as

Genes, PlantPolymorphism, Single NucleotideAcclimatizationGenome-Wide Association StudyPseudotsugacold adaptationcold hardinessDouglas-firGEAgrowthGWASphenology

Identifiers

PMID33477542
PMCPMC7831106
OpenAlexW3123715032

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.