Evidence map›Paper›PMID 33476445›Full record

ArticleJournal of clinical laboratory analysis2021

Association of ISL1 polymorphisms and eosinophilic levels among otitis media patients.

Abhishek Kondyarpu, Chinmay Sundar Ray, Khirod Chandra Panda, Narayan Chandra Biswal, Puppala Venkat Ramchander

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Abhishek KondyarpuInstitute of Life Sciences, Bhubaneswar, India.
Chinmay Sundar RayDepartment of Ear, Nose, and Throat (ENT), Shrirama Chandra Bhanja (SCB) Medical College & Hospital, Cuttack, India.
Khirod Chandra PandaDepartment of Ear, Nose, and Throat (ENT), Shrirama Chandra Bhanja (SCB) Medical College & Hospital, Cuttack, India.
Narayan Chandra BiswalEar, Nose, and Throat (ENT) Unit, Capital Hospital Unit VI, Bhubaneswar, India.
Puppala Venkat RamchanderInstitute of Life Sciences, Bhubaneswar, India.ORCID https://orcid.org/0000-0003-2225-2252
Institute of Life Sciences · INSriram Chandra Bhanja Medical College Hospital · INYangon ENT Hospital · MM

Funding

Department of Biotechnology, New Delhi, Government of India (Grant Sanction: #BT/PR4557/MED/12/534/2012)
6 · The paper itself

Abstract

backgroundOtitis media (OM) is a middle ear inflammatory complex disorder involving genetic and environmental factors. It onsets during childhood and often recurs and perplexes in genetically susceptible patients. Previously, murine models had shown the association of ISL LIM homeobox 1 (ISL1) gene with otitis media with effusion.

aimTo investigate the association of ISL1 genetic variants with otitis media. SUBJECTS AND

methodsA total of 285 cases and 277 controls were recruited for the study. The entire coding region of ISL1 gene was genotyped using Sanger sequencing or single-strand conformation polymorphism methods. Genotype, haplotype, in silico analysis, and linkage disequilibrium analysis were performed.

resultsThe variants rs2303751 (c.504A>G) and rs121913540 (c.513G>A) were associated with OM, and the OR (95%CI) was 0.74 (0.57-0.95) and 0.43 (0.20-0.91), respectively. Besides, the rs2303751 AA genotype was associated with elevated eosinophil numbers in OM when compared to controls. The 5 SNP haplotype analysis of SNPs c.-492A>G, c.504A>G, c.513G>A, c.576C>T, and c.*651A>T revealed A-A-G-C-A to be a risk haplotype in females whereas the 3 SNP haplotype analysis of SNPs c.504A>G, c.513G>A, and c.567C>T suggested G-A-C as protective and A-G-C to be a risk haplotype for otitis media.

conclusionOurs is the first report which shows a significant association of ISL1 variants (rs2303751 and rs121913540) with hearing-related disorder like otitis media in humans. These results implicate the possible role of ISL1 gene in the etiopathology of otitis media. The replication of the study in other ethnic populations may strengthen our findings.

Indexed as

Polymorphism, Single NucleotideAdultCase-Control StudiesEosinophilsFemaleGenetic Predisposition to DiseaseHaplotypesHumansLeukocyte CountLIM-Homeodomain ProteinsLinkage DisequilibriumMaleMiddle AgedOtitis MediaTranscription Factorsinsulin gene enhancer binding protein Isl-1LIM-Homeodomain ProteinsTranscription Factorsgenetic associationhaplotypeISL1otitis mediasingle-nucleotide polymorphism

Identifiers

PMID33476445
PMCPMC7957994
OpenAlexW3123838724

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.