Evidence map›Paper›PMID 33476368›Full record

ArticleNucleic acids research2021

Micro-homology intermediates: RecA's transient sampling revealed at the single molecule level.

Andrew J Lee, Masayuki Endo, Jamie K Hobbs, A Giles Davies, Christoph Wälti

Erratum issuedAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Salting-Out of DNA Origami Nanostructures by Ammonium Sulfate.International journal of molecular sciences · 2022
    Article
  3. Break-ups and make-ups: DNA search and repair.Nature reviews. Microbiology · 2022
    Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Andrew J LeeBioelectronics, The Pollard Institute, School of Electronic and Electrical Engineering, University of Leeds, Woodhouse lane, Leeds LS2 9JT, UK.
Masayuki EndoInstitute for Integrated Cell-Material Sciences, Kyoto University, Yoshida-ushinomiyacho, Sakyo-ku, Kyoto 606-8501, Japan.
Jamie K HobbsDepartment of Physics and Astronomy, University of Sheffield, Houndsfield Road, Sheffield S3 7RH, UK.
A Giles DaviesBioelectronics, The Pollard Institute, School of Electronic and Electrical Engineering, University of Leeds, Woodhouse lane, Leeds LS2 9JT, UK.
Christoph WältiBioelectronics, The Pollard Institute, School of Electronic and Electrical Engineering, University of Leeds, Woodhouse lane, Leeds LS2 9JT, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recombinase A (RecA) is central to homologous recombination. However, despite significant advances, the mechanism with which RecA is able to orchestrate a search for homology remains elusive. DNA nanostructure-augmented high-speed AFM offers the spatial and temporal resolutions required to study the RecA recombination mechanism directly and at the single molecule level. We present the direct in situ observation of RecA-orchestrated alignment of homologous DNA strands to form a stable recombination product within a supporting DNA nanostructure. We show the existence of subtle and short-lived states in the interaction landscape, which suggests that RecA transiently samples micro-homology at the single RecA monomer-level throughout the search for sequence alignment. These transient interactions form the early steps in the search for sequence homology, prior to the formation of stable pairings at >8 nucleotide seeds. The removal of sequence micro-homology results in the loss of the associated transient sampling at that location.

Indexed as

Homologous RecombinationDNADNA-Binding ProteinsEscherichia coli ProteinsMicroscopy, Atomic ForceNanostructuresPolymerizationRec A RecombinasesSequence Homology, Nucleic AcidDNADNA-Binding ProteinsEscherichia coli ProteinsrecA protein, E coliRec A Recombinases

Identifiers

PMID33476368
PMCPMC7897476

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.