Evidence map›Paper›PMID 33475951›Full record

ArticleJournal of biomolecular NMR2021

Detecting aspartate isomerization and backbone cleavage after aspartate in intact proteins by NMR spectroscopy.

Arthur Hinterholzer, Vesna Stanojlovic, Christof Regl, Christian G Huber, Chiara Cabrele, Mario Schubert

Open access · hybridAbstract read
In one paragraph

Article in Journal of biomolecular NMR, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Article
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  8. Review
  9. Expression of acid cleavable Asp-Pro linked multimeric AFP peptide in E. coli.Journal, genetic engineering & biotechnology · 2021
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Arthur HinterholzerChristian Doppler Laboratory for Innovative Tools for Biosimilar Characterization, University of Salzburg, Hellbrunnerstrasse 34, 5020, Salzburg, Austria.ORCID https://orcid.org/0000-0003-0006-6547
Vesna StanojlovicDepartment of Biosciences, University of Salzburg, Billrothstrasse 11, 5020, Salzburg, Austria.ORCID https://orcid.org/0000-0001-5924-9634
Christof ReglChristian Doppler Laboratory for Innovative Tools for Biosimilar Characterization, University of Salzburg, Hellbrunnerstrasse 34, 5020, Salzburg, Austria.ORCID https://orcid.org/0000-0002-7938-4494
Christian G HuberChristian Doppler Laboratory for Innovative Tools for Biosimilar Characterization, University of Salzburg, Hellbrunnerstrasse 34, 5020, Salzburg, Austria.ORCID https://orcid.org/0000-0001-8358-1880
Chiara CabreleChristian Doppler Laboratory for Innovative Tools for Biosimilar Characterization, University of Salzburg, Hellbrunnerstrasse 34, 5020, Salzburg, Austria.ORCID https://orcid.org/0000-0002-7550-6896
Mario SchubertChristian Doppler Laboratory for Innovative Tools for Biosimilar Characterization, University of Salzburg, Hellbrunnerstrasse 34, 5020, Salzburg, Austria. mario.schubert@sbg.ac.at.ORCID http://orcid.org/0000-0003-0278-4091
University of Salzburg · AT

Funding

Bundesministerium für Wissenschaft und Forschung 000000000
6 · The paper itself

Abstract

The monitoring of non-enzymatic post-translational modifications (PTMs) in therapeutic proteins is important to ensure drug safety and efficacy. Together with methionine and asparagine, aspartic acid (Asp) is very sensitive to spontaneous alterations. In particular, Asp residues can undergo isomerization and peptide-bond hydrolysis, especially when embedded in sequence motifs that are prone to succinimide formation or when followed by proline (Pro). As Asp and isoAsp have the same mass, and the Asp-Pro peptide-bond cleavage may lead to an unspecific mass difference of + 18 Da under native conditions or in the case of disulfide-bridged cleavage products, it is challenging to directly detect and characterize such modifications by mass spectrometry (MS). Here we propose a 2D NMR-based approach for the unambiguous identification of isoAsp and the products of Asp-Pro peptide-bond cleavage, namely N-terminal Pro and C-terminal Asp, and demonstrate its applicability to proteins including a therapeutic monoclonal antibody (mAb). To choose the ideal pH conditions under which the NMR signals of isoAsp and C-terminal Asp are distinct from other random coil signals, we determined the pK

Indexed as

Magnetic Resonance SpectroscopyNuclear Magnetic Resonance, BiomolecularAmino Acid SequenceAsparagineAspartic AcidIsomerismPeptidesProteinsStructure-Activity RelationshipAsparagineAspartic AcidPeptidesProteinsMonoclonal antibodyNMR spectroscopyN-terminal prolinePeptide bond cleavagePost-translational modification

Identifiers

PMID33475951
PMCPMC7897204
OpenAlexW3122477827

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.