Evidence map›Paper›PMID 33475861›Full record

ArticleHuman genetics2021

A recurrent missense variant in EYA3 gene is associated with oculo-auriculo-vertebral spectrum.

Angèle Tingaud-Sequeira, Aurélien Trimouille, Manju Salaria, Rachel Stapleton, Stéphane Claverol, Claudio Plaisant, Marc Bonneu, Estelle Lopez, Benoit Arveiler, Didier Lacombe and 1 more

Abstract read
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In one paragraph

Article in Human genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Familial Oculoauriculovertebral Spectrum: A Genomic Investigation of Autosomal Dominant Inheritance.The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association · 2026
    Article
  4. Article
  5. Article
  6. International journal of molecular sciences · 2025
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. [Genetic characteristics of microtia-associated syndromes in neonates].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2022
    Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Angèle Tingaud-SequeiraMaladies Rares: Génétique et Métabolisme (MRGM), U 1211 INSERM, Univ. Bordeaux, 33000, Bordeaux, France.ORCID http://orcid.org/0000-0003-1103-2158
Aurélien TrimouilleMaladies Rares: Génétique et Métabolisme (MRGM), U 1211 INSERM, Univ. Bordeaux, 33000, Bordeaux, France.ORCID http://orcid.org/0000-0002-3457-5684
Manju SalariaGenetic Health Service, Monash Health, 246 Clayton Road, Clayton, VIC, 3168, Australia.
Rachel StapletonGenetic Health Service NZ-South Island Hub, Christchurch Hospital, Christchurch, 8140, New Zealand.
Stéphane ClaverolPlateforme Protéome, Centre Génomique Fonctionnelle Bordeaux, Bordeaux, France.
Claudio PlaisantCHU de Bordeaux, Service de Génétique Médicale, Centre de Référence Anomalies du Développement et Syndromes Malformatifs, CHU Pellegrin-Ecole des Sages-femmes, Place Amélie Raba-Léon, 33076, Bordeaux Cedex, France.ORCID http://orcid.org/0000-0002-1293-6717
Marc BonneuPlateforme Protéome, Centre Génomique Fonctionnelle Bordeaux, Bordeaux, France.ORCID http://orcid.org/0000-0002-7490-346X
Estelle LopezMaladies Rares: Génétique et Métabolisme (MRGM), U 1211 INSERM, Univ. Bordeaux, 33000, Bordeaux, France.
Benoit ArveilerMaladies Rares: Génétique et Métabolisme (MRGM), U 1211 INSERM, Univ. Bordeaux, 33000, Bordeaux, France.ORCID http://orcid.org/0000-0002-2987-2932
Didier LacombeMaladies Rares: Génétique et Métabolisme (MRGM), U 1211 INSERM, Univ. Bordeaux, 33000, Bordeaux, France.ORCID http://orcid.org/0000-0002-8956-2207
Caroline RooryckMaladies Rares: Génétique et Métabolisme (MRGM), U 1211 INSERM, Univ. Bordeaux, 33000, Bordeaux, France. caroline.rooryck-thambo@chu-bordeaux.fr.ORCID http://orcid.org/0000-0002-9789-3591
Université de Bordeaux · FRInstitut de Génomique Fonctionnelle · FRCentre Hospitalier Universitaire de Bordeaux · FRChristchurch Hospital · NZPrince of Wales Hospital · AU

Funding

ANR ANR-12-JVS1-0002
6 · The paper itself

Abstract

Goldenhar syndrome or oculo-auriculo-vertebral spectrum (OAVS) is a complex developmental disorder characterized by asymmetric ear anomalies, hemifacial microsomia, ocular and vertebral defects. We aimed at identifying and characterizing a new gene associated with OAVS. Two affected brothers with OAVS were analyzed by exome sequencing that revealed a missense variant (p.(Asn358Ser)) in the EYA3 gene. EYA3 screening was then performed in 122 OAVS patients that identified the same variant in one individual from an unrelated family. Segregation assessment in both families showed incomplete penetrance and variable expressivity. We investigated this variant in cellular models to determine its pathogenicity and demonstrated an increased half-life of the mutated protein without impact on its ability to dephosphorylate H2AFX following DNA repair pathway induction. Proteomics performed on this cellular model revealed four significantly predicted upstream regulators which are PPARGC1B, YAP1, NFE2L2 and MYC. Moreover, eya3 knocked-down zebrafish embryos developed specific craniofacial abnormalities corroborating previous animal models and supporting its involvement in the OAVS. Additionally, EYA3 gene expression was deregulated in vitro by retinoic acid exposure. EYA3 is the second recurrent gene identified to be associated with OAVS. Moreover, based on protein interactions and related diseases, we suggest the DNA repair as a key molecular pathway involved in craniofacial development.

Indexed as

DNA RepairMutation, MissenseAdaptor Proteins, Signal TransducingAmino Acid SequenceAnimalsChildChild, PreschoolDNA-Binding ProteinsEmbryo, NonmammalianExome SequencingFemaleGene Expression RegulationGoldenhar SyndromeHistonesHumansMaleAdaptor Proteins, Signal TransducingDNA-Binding ProteinsEYA3 protein, humanH2AX protein, humanHistonesMYC protein, humanNFE2L2 protein, humanNF-E2-Related Factor 2PPARGC1B protein, humanProtein Tyrosine PhosphatasesProto-Oncogene Proteins c-mycRNA-Binding ProteinsTranscription FactorsYAP1 protein, humanYAP-Signaling Proteins

Identifiers

PMID33475861
OpenAlexW3122623504

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.