Evidence map›Paper›PMID 33474591›Full record

ArticlePlanta2021

Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting.

Pachamuthu Kannan, Grace Lhaineikim Chongloi, Bharat Bhusan Majhi, Debjani Basu, Karuppannan Veluthambi, Usha Vijayraghavan

Abstract read
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In one paragraph

Article in Planta, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

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3 · Its place in the literature

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3 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Pachamuthu KannanDepartment of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, Tamil Nadu, 625021, India.
Grace Lhaineikim ChongloiDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bengaluru, 560012, India.
Bharat Bhusan MajhiDepartment of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, Tamil Nadu, 625021, India.
Debjani BasuDepartment of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, Tamil Nadu, 625021, India.
Karuppannan VeluthambiDepartment of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, Tamil Nadu, 625021, India.
Usha VijayraghavanDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bengaluru, 560012, India. uvr@iisc.ac.in.ORCID http://orcid.org/0000-0003-3060-625X
Madurai Kamaraj University · INIndian Institute of Science Bangalore · IN

Funding

Department of Biotechnology , Ministry of Science and Technology BT/AB/FG-1 (PH-II)/2009Department of Biotechnology , Ministry of Science and Technology BT/AB/FG-1 (PH-II)/2009]Department of Biotechnology , Ministry of Science and Technology DBT-IISc partnership programme to Biological SciencesUniversity Grants Commission No. F. 18-1/2011 (BSR)
6 · The paper itself

Abstract

MAIN

conclusionA new, stable, null mutant of OsMADS1 generated by homologous recombination-based gene targeting in an indica rice confirms its regulatory role for floral meristem identity, its determinate development and floral organ differentiation. OsMADS1, an E-class MADS-box gene, is an important regulator of rice flower development. Studies of several partial loss-of-function and knockdown mutants show varied floret organ defects and degrees of meristem indeterminacy. The developmental consequences of a true null mutant on floret meristem identity, its determinate development and differentiation of grass-specific organs such as the lemma and palea remain unclear. In this study, we generated an OsMADS1 null mutant by homologous recombination-mediated gene targeting by inserting a selectable marker gene (hpt) in OsMADS1 and replacing parts of its cis-regulatory and coding sequences. A binary vector was constructed with diphtheria toxin A chain gene (DT-A) as a negative marker to eliminate random integrations and the hpt marker for positive selection of homologous recombination. Precise disruption of the endogenous OsMADS1 locus in the rice genome was confirmed by Southern hybridization. The homozygous osmads1ko null mutant displayed severe defects in all floral organs including the lemma and palea. We also noticed striking instances of floral reversion to inflorescence and vegetative states which has not been reported for other mutant alleles of OsMADS1 and further reinforces the role of OsMADS1 in controlling floral meristem determinacy. Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea. Further, our study provides an important perspective on developmental stage-dependent modulation of some OsMADS1 target genes.

Indexed as

Homologous RecombinationMADS Domain ProteinsMutationOryzaFlowersGene Expression Regulation, PlantGene TargetingMeristemPlant ProteinsMADS Domain ProteinsPlant ProteinsFloral meristem determinacy and maintenanceFloral organ identityGene targetingHomologous recombinationOsMADS1Positive/negative selection

Identifiers

PMID33474591
OpenAlexW3123215608

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.