Evidence map›Paper›PMID 33473123›Full record

ArticleNature communications2021

Distinct mechanisms control genome recognition by p53 at its target genes linked to different cell fates.

Marina Farkas, Hideharu Hashimoto, Yingtao Bi, Ramana V Davuluri, Lois Resnick-Silverman, James J Manfredi, Erik W Debler, Steven B McMahon

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. A molecular mechanism for the "digital" response of p53 to stress.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Structural Basis of Mutation-Dependent p53 Tetramerization Deficiency.International journal of molecular sciences · 2022
    Article
  13. ROS-activated CXCR2Experimental & molecular medicine · 2022
    Article
  14. Generation and Characterization of Site-Specifically Mono-Ubiquitylated p53.Chembiochem : a European journal of chemical biology · 2022
    Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. Unlocking p53 response elements: DNA shape is the key.Molecular & cellular oncology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Marina FarkasDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, PA, USA.ORCID 0000-0003-3380-7890
Hideharu HashimotoDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, PA, USA.
Yingtao BiNorthwestern University Feinberg School of Medicine, Chicago, IL, USA.
Ramana V DavuluriNorthwestern University Feinberg School of Medicine, Chicago, IL, USA.ORCID 0000-0002-7053-1064
Lois Resnick-SilvermanIcahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0001-5057-7965
James J ManfrediIcahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0003-2234-9097
Erik W DeblerDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, PA, USA.
Steven B McMahonDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, PA, USA. steven.mcmahon@jefferson.edu.ORCID 0000-0002-3405-1768
Thomas Jefferson University · USIcahn School of Medicine at Mount Sinai · USNorthwestern University · US

Funding

X-Ray Crystallography and Macromolecular CharacterizationP30CA056036 · NCI · THOMAS JEFFERSON UNIVERSITY · PI DANIEL P SILVER · 1995 to 2026
$94.8M
Predictive Modeling & Optimal Control Framework for Model-Based Epidemic Response in DelawareP20GM103446 · NIGMS · UNIVERSITY OF DELAWARE · PI Anjana Narayan Bhat · 2012 to 2026
$67.2M
Role of the p53 C-terminal domain in tissue homeostasis, tumor suppression, and oncogenesisR01CA196234 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MANFREDI, JAMES J, PRIVES, CAROL · 2016 to 2020
$3.0M
Tissue-specific tumor suppressor effects of p53R01CA200256 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MANFREDI, JAMES J · 2015 to 2019
$2.3M
Role of BAG1 in suppressing the intrinsic tumor suppressor activity of MYCR01CA164834 · NCI · THOMAS JEFFERSON UNIVERSITY · PI MCMAHON, STEVEN B. · 2013 to 2017
$1.6M
NCI NIH HHS P30 CA056036NCI NIH HHS R01 CA164834NCI NIH HHS R01 CA196234NCI NIH HHS R01 CA200256NIGMS NIH HHS P20 GM103446
6 · The paper itself

Abstract

The tumor suppressor p53 integrates stress response pathways by selectively engaging one of several potential transcriptomes, thereby triggering cell fate decisions (e.g., cell cycle arrest, apoptosis). Foundational to this process is the binding of tetrameric p53 to 20-bp response elements (REs) in the genome (RRRCWWGYYYN

Indexed as

ApoptosisCell CycleCell Cycle CheckpointsCell DifferentiationCell LineDNADNA-Binding ProteinsHigh-Throughput Nucleotide SequencingHumansModels, MolecularMolecular ConformationProtein BindingResponse ElementsTumor Suppressor Protein p53DNADNA-Binding ProteinsTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID33473123
PMCPMC7817693
OpenAlexW3123070499

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.